GGGenome | Results

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2025-04-08 17:40:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_14670.
FX702239.1:194-213

TTTTGATCTCTCTTCCATCTCCTTGTTCTA194ATCACTCGCTGAATCTCCTAGTTGGTGTCTTCAAAGGACTTGACCATTTG

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8735.
FX738166.1:1342-1361

CAAATGGTCAAGTCCTTTGAAGACACCAAC1342TAGGAGATTCAGCGAGTGATTAGAACAAGGAGATGGAAGAGAGATCAAAA

Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:12136083-12136102

AATAAAGAAAGTACCTTTGAAGACACCAAC12136083TAGGAGATTCAGCGAGTGATTAGAACAAGGAGATGGAAGAGAGATCAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.105 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=ATCACTCGCTGAATCTCCTA&k=0&no_gap=0&offset=0&limit=50
0.133 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=TAGGAGATTCAGCGAGTGAT&k=0&no_gap=0&offset=0&limit=49
0.135 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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