GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:31:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GA__Ed0049G06f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0049G06f, mRNA sequence.
BQ402465.1:400-419
CCTATTGGCGACGGAGAAAATAGCATTAAA400ATCAGAGGTTTCGAACTCCAAAACGTCGTCGGAGCCGTAGAAGAAGCGGC
Gossypium raimondii isolate D5-4 chromosome D5_02.
CP032554.1:8073256-8073275
CCTATTGGCGACGGAGAAAATAGCATCAAA8073256ATCAGAGGTTTCGAACTCCAAAACGTCGTCGGAGCCGTAGAAGAAGCGGC
Gossypium turneri isolate D10-2 chromosome D10_02.
CP032572.1:8803339-8803358
CCTATTGGCGACGGAGAAAATAGCATCAAA8803339ATCAGAGGTTTCGAACTCCAAAACGTCGTCGGAGCCGTAGAAGAAGCGGC
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:13322620-13322639
CCTATTGGCGACGGAGAAAATAGCATTAAA13322620ATCAGAGGTTTCGAACTCCAAAACGTCGTCGGAGCCGTAGAAGAAGCGGC
UFL_217_41 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES816563.1:318-337
GCCGCTTCTTCTACGGCTCCGACGACGTTT318TGGAGTTCGAAACCTCTGATTTTGATGCTACTTTCTCCGTCGCCAATAGA
ndcxe0_0002_F12.ab1 Upland cotton seedling roots at 3h control (ndcxe) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ379758.1:378-397
GCCGCTTCTTCTACGGCTCCGACGACGTTT378TGGAGTTCGAAACCTCTGATTTTAATGCTATTTTCTCCGTCGCCAATAGA
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:81506622-81506641
GCCGCTTCTTCTACGGCTCCGACGACGTTT81506622TGGAGTTCGAAACCTCTGATTTTAATGCTATTTTCTCCGTCGCCAATAGG
Gossypium rotundifolium isolate GPK201 chromosome 2.
CP106723.1:119976910-119976929
GCCGCTTCTTCTACGGCTCCGACGACGTTT119976910TGGAGTTCGAAACCTCTGATTTTAATGCTATTTTCTCCGTCGCCAATAGG
Nezara viridula genome assembly, chromosome: 7.
OV725083.1:30906445-30906464
CTTTAAAACAATTGATGCCATCATCTTTTA30906445TGGAGTTCGAAACCTCTGATTTTTTCAATGATTTTTATTAAAGTTGAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCAGAGGTTTCGAACTCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCAGAGGTTTCGAACTCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.139 | 0.130 | search_plus_done; http://172.18.8.135:50400/match?q=ATCAGAGGTTTCGAACTCCA&k=0&no_gap=0&offset=0&limit=50
0.329 | 0.189 | search_minus_done; http://172.18.8.135:50400/match?q=TGGAGTTCGAAACCTCTGAT&k=0&no_gap=0&offset=0&limit=46
0.332 | 0.003 | cgi_end;

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