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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:10:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

OL6998F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL6998, mRNA sequence.
EH425371.1:105-130
TTCTCTGTGGAGGATTGATCTGATTTAAGC105ATCATCTTCACCGAGAAGTGCGACAAGCATCTTCTCGTAATCTCCGCGAGTGTCTT
OL8654F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8654, mRNA sequence.
EH428499.1:207-232
TTCTCTGTGGAGGATTGATCTGATTTAAGC207ATCATCTTCACCGAGAAGTGCGACAAGCATCTTCTCGTAATCTCCGCGAGTGTCTT
OL8679F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8679, mRNA sequence.
EH428525.1:181-206
TTCTCTGTGGAGGATTGATCTGATTTAAGC181ATCATCTTCACCGAGAAGTGCGACAAGCATCTTCTCGTAATCTCCGCGAGTGTCTT
OL8687F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8687, mRNA sequence.
EH428554.1:177-202
TTCTCTGTGGAGGATTGATCTGATTTAAGC177ATCATCTTCACCGAGAAGTGCGACAAGCATCTTCTCGTAATCTCCGCGAGTGTCTT
OL8685F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8685, mRNA sequence.
EH428556.1:205-230
TTCTCTGTGGAGGATTGATCTGATTTAAGC205ATCATCTTCACCGAGAAGTGCGACAAGCATCTTCTCGTAATCTCCGCGAGTGTCTT
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:31823131-31823156
TTCTCTGTGGAGGATTGATCTGATTTAAGC31823131ATCATCTTCACCGAGAAGTGCGACAAGCATCTTCTCGTAATCTCCGCGAGTGTCTT
Cardamine chenopodiifolia genome assembly, chromosome: 9.
OZ000467.1:16085542-16085567
TTTATCTGAGGAGGATTTGATAGATTAAGC16085542ATCATCTTCACCGAGAAGTGCGACAAGCATCTTCTCGTAATCTCCACGAGTGTCTT
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a005L11_SP6.
AM057817.1:295-320
AAGACACTCGCGGAGATTACGAGAAGATGC295TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a008N17_SP6.
AM058659.1:298-323
AAGACACTCGCGGAGATTACGAGAAGATGC298TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a014F16_SP6.
AM060178.1:274-299
AAGACACTCGCGGAGATTACGAGAAGATGC274TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a022K21_SP6.
AM062547.1:156-181
AAGACACTCGCGGAGATTACGAGAAGATGC156TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
OL8654R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8654, mRNA sequence.
EH428501.1:261-286
AAGACACTCGCGGAGATTACGAGAAGATGC261TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
OL8685R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8685, mRNA sequence.
EH428545.1:261-286
AAGACACTCGCGGAGATTACGAGAAGATGC261TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
OL8679R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8679, mRNA sequence.
EH428547.1:261-286
AAGACACTCGCGGAGATTACGAGAAGATGC261TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
OL8687R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8687, mRNA sequence.
EH428561.1:261-286
AAGACACTCGCGGAGATTACGAGAAGATGC261TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
46RDOAG_UP_057_D02_01FEB2006_010 Brassica oleracea 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
ES937947.1:435-460
AAGACACTCGCGGAGATTACGAGAAGATGC435TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
46RDOAG_UP_063_D01_01FEB2006_009 Brassica oleracea 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
ES938463.1:120-145
AAGACACTCGCGGAGATTACGAGAAGAGGC120TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
47RDOAH_UP_054_B06_30JAN2006_046 Brassica oleracea 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
ES940181.1:362-387
AAGACACTCGCGGAGATTACGAGAAGATGC362TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
48RDOAM_UP_068_F01_07FEB2006_005 Brassica oleracea 48RDOAM Brassica oleracea cDNA 5', mRNA sequence.
ES944452.1:492-517
AAGACACTCGCGGAGATTACGAGAAGATGC492TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
BOT01-95F5TF BOT01 Brassica oleracea genomic clone BOT01-95F5, genomic survey sequence.
FI748219.1:674-699
AAGACACTCGCGGAGATTACGAGAAGATGC674TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
AL_NL019H11.R AL_NL Arabidopsis lyrata genomic 3', genomic survey sequence.
HN193561.1:545-570
AAGACACCCGTGGAGATTACGAGAAGATGC545TTGTCGCACTTCTCGGTGAAGATGATGCTTAATCAATCAATCCTCCGCAGAAAAAC
AL_NL060O08.F AL_NL Arabidopsis lyrata genomic 5', genomic survey sequence.
HN224414.1:550-575
AAGACACCCGTGGAGATTACGAGAAGATGC550TTGTCGCACTTCTCGGTGAAGATGATGCTTAATCAATCAATCCTCCGCAGAAAAAC
AL_NL033K23.F AL_NL Arabidopsis lyrata genomic 5', genomic survey sequence.
HN225805.1:565-590
AAGACACCCGTGGAGATTACGAGAAGATGC565TTGTCGCACTTCTCGGTGAAGATGATGCTTAATCAATCAATCCTCCGCAGAAAAAC
Arabidopsis arenosa genome assembly, chromosome: 1.
LR999451.1:15884791-15884816
AAGACACTCGTGGAGATTACGAGAAGATGC15884791TTGTCGCACTTCTCGGTGAAGATGATGCTTAATCAATCAATCCTCCACAGAGAAAC
Nasturtium officinale genome assembly, chromosome: 2.
OY978500.1:10787894-10787919
AAGACACTCGTGGAGATTACGAGAAGATGC10787894TTGTCGCACTTCTCGGTGAAGATGATGCTTAATCTATCAAAACCTTCACAGAGAAA
Cardamine chenopodiifolia genome assembly, chromosome: 25.
OZ000483.1:13027714-13027739
AAGACACTCGTGGAGATTACGAGAAGATGC13027714TTGTCGCACTTCTCGGTGAAGATGATGCTTAATCAATCAATCCTCCTCAGGAGAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCATCTTCACCGAGAAGTGCGACAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCATCTTCACCGAGAAGTGCGACAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.376 | 0.367 | search_plus_done; http://172.18.8.135:50400/match?q=ATCATCTTCACCGAGAAGTGCGACAA&k=0&no_gap=0&offset=0&limit=50
1.013 | 0.637 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTCGCACTTCTCGGTGAAGATGAT&k=0&no_gap=0&offset=0&limit=43
1.026 | 0.013 | cgi_end;

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