GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 12:03:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Camellia sinensis Singletons21505.Casi mRNA sequence.
HP736776.1:1231-1250
GTCTTGCACGCAATGCAAGAGCATGCTGTG1231ATCATGCATCCTCTCCCAAGGCTTGATGAGATAACTGTGGACGTTGATGA
Musa balbisiana clone BAC MBP-36B13, complete sequence.
FN396603.1:1036-1055
GTGTTAGATGTGCTTCCAAAGCATGCTGTT1036ATCATGCATCCTCTCCCAAGGCTCGATGAGGTACGTGAATTCATCCGAAT
Musa balbisiana clone BAC MBP-26I6, complete sequence.
FN396604.1:9520-9539
GTGTTAGATGTGCTTCCAAAGCATGCTGTT9520ATCATGCATCCTCTCCCAAGGCTCGATGAGGTACGTGAATTCATCCGAAT
Musa balbisiana BAC contig MBP-32N20c, complete sequence.
FN396606.1:9520-9539
GTGTTAGATGTGCTTCCAAAGCATGCTGTT9520ATCATGCATCCTCTCCCAAGGCTCGATGAGGTACGTGAATTCATCCGAAT
Pulicaria dysenterica genome assembly, chromosome: 4.
OX359291.1:19181533-19181552
GTGTTGGGTGTCATGCAGAAGCATGCTGTC19181533ATCATGCATCCTCTCCCAAGGCTTGATGAGGTGTGTCAATGAGAAATGCT
Sambucus nigra genome assembly, chromosome: 8.
OX422214.1:484269914-484269933
GTCTTGGGTGTAATGCAGAAGCATGCAGTG484269914ATCATGCATCCTCTCCCAAGGCTTGATGAGGTGAGTTATATTAGAGCTTT
Draba incana genome assembly, chromosome: 14.
OY755215.1:30913568-30913587
ATATTGGTAAGTCTGGAAAGGACTTAAGCC30913568ATCATGCATCCTCTCCCAAGGTTGGTTTGAAGGAAAACAGTGTGGTTCGG
Musa acuminata subsp. malaccensis isolate AA chromosome 3.
CP126372.1:40339214-40339233
ATTCGGATGAATTCACGTACCTCATCGAGT40339214CTTGGGAGAGGATGCATGATAACGGCATGCTTTGGAAGCACATCTAACAC
Musa acuminata subsp. malaccensis isolate AA chromosome 14.
CP126383.1:40073567-40073586
ATTCGGATGAATTCACGTACCTCATCGAGT40073567CTTGGGAGAGGATGCATGATAACGGCATGCTTTGGAAGCACATCTAACAC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A03.
HG996468.1:37499834-37499853
ATTCGGATGAATTCACGTACCTCATCGAGT37499834CTTGGGAGAGGATGCATGATAACGGCATGCTTTGGAAGCACATCTAACAC
Musa schizocarpa genome assembly, chromosome: S03.
LS990917.1:42033829-42033848
ATTCGGATGAATTCATGTACCTCATCGAGC42033829CTTGGGAGAGGATGCATGATAACGGCATGCTTTGGAAGCACATCTAACAC
Calendula officinalis genome assembly, chromosome: 6.
OY970825.1:75378261-75378280
CAAATCAAGAGTGTGCTTACCTCATCAAGC75378261CTTGGGAGAGGATGCATGATGATTGCATGCTTTTGCATGACACTTAAAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCATGCATCCTCTCCCAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCATGCATCCTCTCCCAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.132 | 0.124 | search_plus_done; http://172.18.8.135:50400/match?q=ATCATGCATCCTCTCCCAAG&k=0&no_gap=0&offset=0&limit=50
0.162 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=CTTGGGAGAGGATGCATGAT&k=0&no_gap=0&offset=0&limit=43
0.166 | 0.003 | cgi_end;

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