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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 07:40:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

12JKBNM1_UP_002_G03_19NOV2003_019 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727841.1:703-723
TTTTTGTTTTGGGGGAGCTGTTTGTTGATC703ATCATTCGTCGTGTAAACGCCACTGGG
91-E022898-021-017-E23-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022E2317Q, mRNA sequence.
CX187987.1:685-705
GATTTTATTTTGGGGAGCTGTTTGTTGATC685ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGT
Brassica oleracea var. viridis mRNA, clone: KALE-057I08, 3' end sequence.
DK537132.1:695-715
GATTTTATTTTGGGGAGCTGTTTGTTGATC695ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
63JKCOT5_T3_001_H02_04JAN2005_002 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY017330.1:701-721
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC701ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
63JKCOT5_T3_011_F04_24JAN2005_022 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY018175.1:681-701
GTTTTTGTTTTGCGGAGCTGTTTGTTGATC681ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
63JKCOT5_T3_018_C09_22JAN2005_075 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY021411.1:575-595
GATTTTATTTTGGGGAGCTGTTTGTTGATC575ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
63JKCOT5_T3_038_G03_25JAN2005_019 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY023233.1:701-721
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC701ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTT
BNZDA_T7_009_F05_29MAY2003_019 Brassica napus - BNZDA Brassica napus cDNA 5', mRNA sequence.
EE569485.1:180-200
GATTTTATTTTGGGGAGCTGTTTGTTGATC180ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
69JKME5D_T3_030_B06_28MAR2005_046 69JKME5D Brassica napus cDNA 5', mRNA sequence.
ES268598.1:622-642
GATTTTATTTTGGGGAGCTGTTTGTTGATC622ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
0162876 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV130763.1:170-190
GATTTTATTTTGGGGAGCTGTTTGTTGATC170ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
RR1AU67TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV527124.1:686-706
GTTTTTATTTCGGGGAGCTGTTTGTTGATC686ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
RR2AN17TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV536801.1:677-697
GTTTTTATTTCGGGGAGCTGTTTGTTGATC677ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTAATCTTAT
RR3AI14TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV549165.1:686-706
GTTTTTATTTCGGGGAGCTGTTTGTTGATC686ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
RR3BF31TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV552216.1:683-703
GTTTTTATTTCGGGGAGCTGTTTGTTGATC683ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAACTATATTTAT
RR4B696TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV569306.1:685-705
GTTTTTATTTCGGGGAGCTGTTTGTTGATC685ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
RR4BJ02TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV570409.1:685-705
GTTTTTATTTCGGGGAGCTGTTTGTTGATC685ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BR050493 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-23F03 5', mRNA sequence.
EX065849.1:540-560
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC540ATCATTCGTCGTGTAAACGCCAC
BR051293 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-34A12 5', mRNA sequence.
EX066649.1:543-563
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC543ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTA
BR051497 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-36F06 5', mRNA sequence.
EX066853.1:543-563
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC543ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTA
BR052126 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-45A08 5', mRNA sequence.
EX067482.1:410-430
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC410ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
RR1BZ07TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX747317.1:684-704
GTTTTTATTTCGGGGAGCTGTTTGTTGATC684ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
RS1BY56TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX887849.1:693-713
GTTTTTATTTCGGGGAGCTGTTTGTTGATC693ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAACTATATTTATCTTAT
RR4HB73TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD990385.1:515-535
GTTTTTATTTCGGGGAGCTGTTTGTTGATC515ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BNAPO1GH_T3_002_D09_14JUN2007_073 BNAPO1GH Brassica napus cDNA 5', mRNA sequence.
GR450257.1:560-580
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC560ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BNAPO2GH_T3_001_F04_20JUN2007_022 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR452972.1:688-708
GATTTTATTTTGGGGAGCTGTTTGTTGATC688ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAA
BNAPO2GH_T3_003_A12_19JUN2007_096 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR453063.1:690-710
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC690ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BNAPO2GH_T3_017_G05_20JUN2007_035 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR454421.1:632-652
GATTTTATTTTGGGGAGCTGTTTGTTGATC632ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
BNAPO2GH_T3_023_E11_20JUN2007_087 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR454948.1:397-417
GATTTTATTTTGGGGAGCTGTTTGTTGATC397ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
BNAPO2GH_T3_023_E12_20JUN2007_088 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR454949.1:397-417
GATTTTATTTTGGGGAGCTGTTTGTTGATC397ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
BNAPO2GH_T3_023_F11_20JUN2007_085 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR454958.1:397-417
GATTTTATTTTGGGGAGCTGTTTGTTGATC397ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
BNAPO2GH_T3_026_C12_20JUN2007_092 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR455199.1:359-379
GATTTTATTTTGGGGAGCTGTTTGTTGATC359ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
BNAPO3GH_T3_003_D12_13JULY2007_090 BNAPO3GH Brassica napus cDNA 5', mRNA sequence.
GR456028.1:671-691
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC671ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BNAPO3GH_T3_003_G04_13JULY2007_020 BNAPO3GH Brassica napus cDNA 5', mRNA sequence.
GR456054.1:367-387
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC367ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTA
BNAPO3GH_T3_011_B11_13JULY2007_093 BNAPO3GH Brassica napus cDNA 5', mRNA sequence.
GR456699.1:690-710
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC690ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BNAPO4GH_T3_003_D06_20JULY2007_042 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR458819.1:592-612
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC592ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BNAPO4GH_T3_004_F11_20JULY2007_085 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR458936.1:687-707
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC687ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BNAPO4GH_T3_005_D09_20JULY2007_073 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR459006.1:687-707
GTTGTTTTTTTGGGGAGCTGTTTGTTGATC687ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BNAPO4GH_T3_010_G12_20JULY2007_084 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR459503.1:691-711
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC691ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BNAPO4GH_T3_012_A12_20JULY2007_096 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR459611.1:653-673
GATTTTATTTTGGGGAGCTGTTTGTTGATC653ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
BNAPO4GH_T3_024_E10_20JULY2007_072 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR460773.1:667-687
GATTTTATTTTGGGGAGCTGTTTGTTGATC667ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
BNAPO4GH_T3_035_A07_23JULY2007_063 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR461735.1:688-708
GATTTTATTTTGGGGAGCTGTTTGTTGATC688ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
BNAPO4GH_T3_037_D06_23JULY2007_042 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR461951.1:400-420
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC400ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BNAPO4GH_T3_040_F02_23JULY2007_006 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR462245.1:675-695
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC675ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BNAPO4GH_T3_041_G11_23JULY2007_083 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR462359.1:398-418
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC398ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BNAPO4GH_T3_045_C12_23JULY2007_092 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR462680.1:398-418
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC398ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BNAPO4GH_T3_045_F11_23JULY2007_085 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR462715.1:673-693
GATTTTATTTTGGGGAGCTGTTTGTTGATC673ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
BNAPO4GH_T3_047_F04_23JULY2007_022 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR462886.1:688-708
GATTTTATTTTGGGGAGCTGTTTGTTGATC688ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
BNAPO4GH_T3_047_G04_23JULY2007_020 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR462898.1:690-710
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC690ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BNAPO4GH_T3_048_E11_23JULY2007_087 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR462974.1:688-708
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC688ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTA
BNAPO4GH_T3_051_F03_23JULY2007_021 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR463250.1:687-707
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC687ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086J10, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC172864.2:14028-14048
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC14028ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:54682842-54682862
GATTTTATTTTGGGGAGCTGTTTGTTGATC54682842ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:31851597-31851617
GTTTTTATTTCGGGGAGCTGTTTGTTGATC31851597ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAACTATATTTATCTTAT
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:4428096-4428116
GTTTTTATTTCGGGGAGCTGTTTGTTGATC4428096ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAACTATATTTATCTTAT
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:5730065-5730085
GTTTTTATTTCGGGGAGCTGTTTGTTGATC5730065ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAACTATATTTATCTTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCATTCGTCGTGTAAACGCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCATTCGTCGTGTAAACGCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
3.456 | 3.447 | search_plus_done; http://172.18.8.135:50400/match?q=ATCATTCGTCGTGTAAACGCC&k=0&no_gap=0&offset=0&limit=50
3.504 | 0.049 | search_minus_done; http://172.18.8.135:50400/match?q=GGCGTTTACACGACGAATGAT&k=0&no_gap=0&offset=0&limit=0
3.504 | 0.000 | cgi_end;

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