GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:22:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

ESTFullTSD1_73 ESTFullTSD1 Camellia sinensis var. assamica cDNA clone A193 5', mRNA sequence.
GH709627.1:119-138
TTTTTTTTTTTTTTTTCTTATTGATCAACA119ATCATTGACCACCACATCATAAATACATTCATATCACTCACCAACACACT
Allium cepa genome assembly, chromosome: 8.
LR994636.1:163867406-163867425
CCTATCAAAACCCACAAAATCACCCTCACC163867406ATCATTGACCACCACATCATGACCACGATCTGGATGCTAACTAGTCCAAT
Arctium minus genome assembly, chromosome: 2.
OX941081.1:60907178-60907197
CCTCCCCTACACTATTGACAACCAACCATC60907178ATCATTGACCACCACATCATATTACTTTTAATTAGATGGGAAAATCATCA
Pseudomonas sichuanensis strain B21-052 chromosome, complete genome.
CP087165.1:876762-876781
AATCTCGTCGTGCAGCGATTGCAGGTCACG876762ATCATTGACCACCACATCATGTGCGTGGCGCAGGCGCTCTTCCCGGGCCA
Pseudomonas entomophila strain TVIN-A01 chromosome.
CP132921.1:1406732-1406751
GATCTCGTCGTGCAGCGATTGCAGGTCACG1406732ATCATTGACCACCACATCATCGGCATGGCGCAGGCGCTCTTCCCGGGCCA
Lobophora halterata genome assembly, chromosome: 19.
OW052020.1:1967322-1967341
AGTACAAGAGAACCGCACCCCAGCGCAAAA1967322ATCATTGACCACCACATCATAGTGTTAAACAAGTTATGCCCATAATTATA
Saturnia pavonia genome assembly, chromosome: 18.
OX383912.1:9453785-9453804
GACTTCTAATGTAAGATTATTGAATGTGGT9453785ATCATTGACCACCACATCATTTATGGGTAAAACTCCAATATGAAACCGCT
Rana temporaria genome assembly, chromosome: 2.
LR991681.1:246038519-246038538
CCAGATATCTGCAGTAGCTGGAGATCTGCT246038519ATGATGTGGTGGTCAATGATACATACAAAACGTTTTTTTATATATTATCA
Chlorobium limicola DSM 245 chromosome, complete genome.
CP001097.1:342803-342822
CGCTTGAACTTGGATATGCTGAACAGTTTG342803ATGATGTGGTGGTCAATGATGATCTGGAACAGACGGTGACGGCCGTTACC
Stenotrophomonas maltophilia strain Col1 chromosome, complete genome.
CP077679.1:3418002-3418021
CCAGCCGCGCGCAGCGGTTGGCGCTGGCCG3418002ATGATGTGGTGGTCAATGATGGACAGCCGGAGGACCTGCAGGTGCAGGTG
Stenotrophomonas geniculata strain E119 chromosome, complete genome.
CP078103.1:3886687-3886706
CCAGCCGCGCGCAGCGGTTGGCGCTGGCCG3886687ATGATGTGGTGGTCAATGATGGACAGCCGGAGGACCTGCAGGTGCAGGTG
Pseudomonas sp. AO-1 plasmid unnamed.
CP079949.1:57842-57861
CCAGCCGCGAGGCGCGCCTGGCAATGGCCG57842ATGATGTGGTGGTCAATGATGGCCACCCGGACCACCTGCAGGCGCATGTG
Stenotrophomonas sp. NY11291 chromosome, complete genome.
CP096975.1:3799084-3799103
CCAGCCGCGCGCAGCGGTTGGCGCTGGCCG3799084ATGATGTGGTGGTCAATGATGGACAGCCGGAGGACCTGCAGGTGCAGGTG
Pseudomonas sp. NyZ480 chromosome, complete genome.
CP120626.1:4679127-4679146
TGGCCCGTGAGGAGCGCTTGCGCCATGCCG4679127ATGATGTGGTGGTCAATGATCGCGACCTGAGCGCGCTGCATGCGCAGATC
Stenotrophomonas sp. 24(2023) chromosome, complete genome.
CP133160.1:918569-918588
CCCGTCGGGCACAGCGGCTGGCGCTCGCCG918569ATGATGTGGTGGTCAATGATGGCCACCCGGATGATCTGCAGGCGCAGGTG
Pseudomonas entomophila str. L48 chromosome,complete sequence.
CT573326.1:4971335-4971354
TGGCCCGGGAAGAGCGCCTGCGCCATGCCG4971335ATGATGTGGTGGTCAATGATCGTGACCTGCAATCGCTGCACGACGAGATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCATTGACCACCACATCAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCATTGACCACCACATCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.178 | 0.169 | search_plus_done; http://172.18.8.135:50400/match?q=ATCATTGACCACCACATCAT&k=0&no_gap=0&offset=0&limit=50
0.201 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=ATGATGTGGTGGTCAATGAT&k=0&no_gap=0&offset=0&limit=43
0.207 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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