GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:29:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Uncultured bacterium clone ncd827f02c1 16S ribosomal RNA gene, partial sequence.
JF077137.1:1308-1325
CTCCACCTCATGAAGTCCGAGTCGCTTATA1308ATCCCAAATCAGCAACGCTGCGGTGAATACTTTCCCGGGCT
Uncultured bacterium clone ncd1103a07c1 16S ribosomal RNA gene, partial sequence.
JF093454.1:1305-1322
CTCGACCTCCTGAAGTCGGAGTCGCTAGTA1305ATCCCAAATCAGCAACGCTGCGGTGAATACTTTCCCGGGGCT
Uncultured bacterium clone ncd1304c02c1 16S ribosomal RNA gene, partial sequence.
JF096114.1:1302-1319
CTCGACCCCATGAAGTCGGAGTCCCTAGTA1302ATCCCAAATCAGCAACGCTGCGGTGAAAACGTTCCCGGGCCT
Uncultured bacterium clone ncd1020a10c1 16S ribosomal RNA gene, partial sequence.
JF099799.1:1306-1323
CTCGACCCCATGAAGTCCGAGTCCCTAGTA1306ATCCCAAATCAGCAACGCTGGCGTGAATACTTTCCCGGCCT
Uncultured bacterium clone ncd2147a12c1 16S ribosomal RNA gene, partial sequence.
JF184802.1:1305-1322
CTCGACCTCATGAAGTCCGAATCGCTAATA1305ATCCCAAATCAGCAACGCTGCGGGGAATACTTTTCCCGGGGCT
Uncultured bacterium clone nbu62a01c1 16S ribosomal RNA gene, partial sequence.
KF063040.1:1303-1320
CTCGACCTCATGAAGTCGGAATCGCTAGTA1303ATCCCAAATCAGCAACGCCTGCGGGTGAATACGTTCCCCGGGCCT
Uncultured bacterium clone nbu590c05c1 16S ribosomal RNA gene, partial sequence.
KF070663.1:1305-1322
CTCGACCTCATGAAGTCGGAGTCGCTAGTA1305ATCCCAAATCAGCAACGCTGCGGTGAATACGTTCCCGGGGCTT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24732548-24732565
TTGCTTTGTAGACATGCTAAAGTGAATCTC24732548ATCCCAAATCAGCAACGCAGCGATGAGGATCTCACGACTTATAGTCGA
Camelina sativa cultivar CO46 chromosome 1.
CP131539.1:4272750-4272767
CATTAGTTATCAGTAGAGAATACAAAATGT4272750ATCCCAAATCAGCAACGCATTCTCGTATGGGACAATATTAGTGATCGA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:24879189-24879206
TTGCTTTGTAGACATGCTAAAGTGAATCTC24879189ATCCCAAATCAGCAACGCAGCGATGAGGATCTCACGACTTATAGTCGA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:15114490-15114507
TTGCTTTGTAGGCATGCTAAAGTGAAGCTA15114490ATCCCAAATCAGCAACGCAGCGATGAGGATCTCACTACTTATAGTCGA
Brassica rapa genome, scaffold: A03.
LR031572.1:24348956-24348973
TTGCTTTGTAGACATGCTAAAGTGATATTA24348956ATCCCAAATCAGCAACGCAGAGATGGTTGGATCTCCCTCGGCGGCATT
Brassica rapa genome, scaffold: A03.
LR031572.1:24363093-24363110
TTGCTTTGTAGACATGCTAAAGTGAATCTC24363093ATCCCAAATCAGCAACGCAGCGATGAGGATCTCACGACTTATAGTCGA
Brassica rapa genome, scaffold: A08.
LR031575.1:14044188-14044205
TTGCTTTGTAGGCATGCTAAAGTGAAGCTA14044188ATCCCAAATCAGCAACGCAGCGATGAGGATCTCACTACTTATAGTCGA
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24476832-24476849
TTGCTTTGTAGACATGCTAAAGTGATATTA24476832ATCCCAAATCAGCAACGCAGAGATGGTTGGATCTCCCTCGGCGGCATT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24490969-24490986
TTGCTTTGTAGACATGCTAAAGTGAATCTC24490969ATCCCAAATCAGCAACGCAGCGATGAGGATCTCACGACTTATAGTCGA
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:19862220-19862237
TTGCTTTGTAGGCATGCTAAAGTGAAGCTA19862220ATCCCAAATCAGCAACGCAGCGATGAGGATCTCACTACTTATAGTCGA
Yersinia enterocolitica subsp. enterocolitica 8081 complete genome.
AM286415.1:1837901-1837918
GGAATAGAGCGCCCGGCATTGATGACGGTC1837901ATCCCAAATCAGCAACGCAGCAAAACTGTGGTACTGGATTTAGGGGCT
Yersinia enterocolitica strain WA, complete genome.
CP009367.1:1158311-1158328
GGAATAGAGCGCCCGGCATTGATGACGGTC1158311ATCCCAAATCAGCAACGCAGCAAAACTGTGGTACTGGATTTAGGGGCT
Yersinia enterocolitica strain 8081, complete genome.
CP009846.1:1167345-1167362
GGAATAGAGCGCCCGGCATTGATGACGGTC1167345ATCCCAAATCAGCAACGCAGCAAAACTGTGGTACTGGATTTAGGGGCT
Yersinia enterocolitica subsp. palearctica strain Y1 chromosome, complete genome.
CP030980.1:1329061-1329078
GGAATAGAGCGCCCGGCATTGATGACGGTC1329061ATCCCAAATCAGCAACGCAGCAAAACTGTGGTACTGGATTTAGGGGCT
Yersinia enterocolitica strain FDAARGOS_1082 chromosome, complete genome.
CP068146.1:3692067-3692084
GGAATAGAGCGCCCGGCATTGATGACGGTC3692067ATCCCAAATCAGCAACGCAGCAAAACTGTGGTACTGGATTTAGGGGCT
Yersinia enterocolitica W22703 biovar 2, serovar O:9, contig 7180000001421.
FR718582.1:8291-8308
GGAATAGAGCGCCCGGCATTGATGACGGTC8291ATCCCAAATCAGCAACGCAGCAAAACTGTGGTACTGGATTTAGGGGCT
Yersinia enterocolitica subsp. palearctica Y11.
FR729477.2:561588-561605
GGAATAGAGCGCCCGGCATTGATGACGGTC561588ATCCCAAATCAGCAACGCAGCAAAACTGTGGTACTGGATTTAGGGGCT
Yersinia enterocolitica isolate MGYG-HGUT-02335 genome assembly, chromosome: 1.
LR698980.1:1822161-1822178
GGAATAGAGCGCCCGGCATTGATGACGGTC1822161ATCCCAAATCAGCAACGCAGCAAAACTGTGGTACTGGATTTAGGGGCT
Synanthedon andrenaeformis genome assembly, chromosome: 29.
OW387805.2:4537535-4537552
TTTTTAATTAAAAAAGTAGGGAATTAAAGT4537535ATCCCAAATCAGCAACGCTCTTCATTTATATTTTATCATTTATCTATA
Acleris literana genome assembly, chromosome: 9.
OX335677.1:16051209-16051226
GTAGTCAATAGTGATCATGAAATTAAGAAC16051209ATCCCAAATCAGCAACGCGCCTATAACAAACAAACTGACAATTATAAT
Acleris literana genome assembly, chromosome: 28.
OX335696.1:11030561-11030578
GTAGTTAATAGTGATCATGAAATTAAGAAC11030561ATCCCAAATCAGCAACGCGCCTATAACAAACAAACTGACAATTATAAT
Salticus scenicus genome assembly, chromosome: 10.
OZ005657.1:254489553-254489570
GAGAAAAATCTTCGTAACTAAGAATGTCCA254489553ATCCCAAATCAGCAACGCCAAAATTATTCCGCCTAGTATTCCGCCTCC
Microdon myrmicae genome assembly, chromosome: 3.
OZ007498.1:18542774-18542791
TTTTTTCCTCTATCGCTGCCCACAGATTTA18542774ATCCCAAATCAGCAACGCTTGTGCTAGCGAAACCCAGGTAATAACTGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH039L17, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC241126.1:30366-30383
TCGACTATAAGTCGTGAGATCCTCATCGCT30366GCGTTGCTGATTTGGGATGAGATTCACTTTAGCATGTCTACAAAGCAA
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:11337938-11337955
TCGACTATAAGTAGTGAGATCCTCATCGCT11337938GCGTTGCTGATTTGGGATTAGCTTCACTTTAGCATGCCTACAAAGCAA
Mitragyna speciosa corynanthe C17 O-methyltransferase mRNA, complete cds.
OQ129433.1:230-247
ACGTCAATAAATTTTGTGGAAAGGCATTTT230GCGTTGCTGATTTGGGATGCTCAGTTGGACCTAACACTTTGATAGCAA
Mitragyna speciosa enol methyltransferase mRNA, complete cds.
OQ472287.1:236-253
ACGTCAATAAATTTTGTGGAAAGGCATTTT236GCGTTGCTGATTTGGGATGCTCAGTTGGACCTAACACTTTGATAGCAA
Yersinia enterocolitica subsp. palearctica 105.5R(r), complete genome.
CP002246.1:2854460-2854477
AGCCCCTAAATCCAGTACCACAGTTTTGCT2854460GCGTTGCTGATTTGGGATGACCGTCATCAATGCCGGGCGCTCTATTCC
Haliscomenobacter hydrossis DSM 1100 chromosome, complete genome.
CP002691.1:4586812-4586829
TTGTTTCTTCTACTGGTTTTTCGATAGTCA4586812GCGTTGCTGATTTGGGATTGTCGAATTCGCTTTGGAACAAATAGGGCT
Yersinia enterocolitica strain 2516-87, complete genome.
CP009838.1:6726-6743
AGCCCCTAAATCCAGTACCACAGTTTTGCT6726GCGTTGCTGATTTGGGATGACCGTCATCAATGCCGGGCGCTCTATTCC
Yersinia enterocolitica strain KNG22703, complete genome.
CP011286.1:2643513-2643530
AGCCCCTAAATCCAGTACCACAGTTTTGCT2643513GCGTTGCTGATTTGGGATGACCGTCATCAATGCCGGGCGCTCTATTCC
Yersinia enterocolitica strain YE165 chromosome, complete sequence.
CP016931.1:2930046-2930063
AGCCCCTAAATCCAGTACCACAGTTTTGCT2930046GCGTTGCTGATTTGGGATGACCGTCATCAATGCCGGGCGCTCTATTCC
Yersinia enterocolitica strain YE7 chromosome, complete sequence.
CP016935.1:2747828-2747845
AGCCCCTAAATCCAGTACCACAGTTTTGCT2747828GCGTTGCTGATTTGGGATGACCGTCATCAATGCCGGGCGCTCTATTCC
Yersinia enterocolitica strain YE6 chromosome, complete sequence.
CP016937.1:3450135-3450152
AGCCCCTAAATCCAGTACCACAGTTTTGCT3450135GCGTTGCTGATTTGGGATGACCGTCATCAATGCCGGGCGCTCTATTCC
Yersinia enterocolitica strain YE5 chromosome, complete sequence.
CP016940.1:2680238-2680255
AGCCCCTAAATCCAGTACCACAGTTTTGCT2680238GCGTTGCTGATTTGGGATGACCGTCATCAATGCCGGGCGCTCTATTCC
Yersinia enterocolitica strain YE3 chromosome, complete sequence.
CP016944.1:2751924-2751941
AGCCCCTAAATCCAGTACCACAGTTTTGCT2751924GCGTTGCTGATTTGGGATGACCGTCATCAATGCCGGGCGCTCTATTCC
Yersinia enterocolitica strain YE1 chromosome, complete sequence.
CP016945.1:2754775-2754792
AGCCCCTAAATCCAGTACCACAGTTTTGCT2754775GCGTTGCTGATTTGGGATGACCGTCATCAATGCCGGGCGCTCTATTCC
Yersinia enterocolitica strain FDAARGOS_1090 chromosome, complete genome.
CP068147.1:4394289-4394306
AGCCCCTAAATCCAGTACCACAGTTTTGCT4394289GCGTTGCTGATTTGGGATGACCGTCATCAATGCCGGGCGCTCTATTCC
Yersinia enterocolitica subsp. enterocolitica strain NCTC13629 genome assembly, chromosome: 1.
LR134161.1:2982688-2982705
AGCCCCTAAATCCAGTACCACAGTTTTGCT2982688GCGTTGCTGATTTGGGATGACCGTCATCAATGCCGGGCGCTCTATTCC
Yersinia enterocolitica subsp. palearctica strain NCTC13769 genome assembly, chromosome: 1.
LR134335.1:780637-780654
AGCCCCTAAATCCAGTACCACAGTTTTGCT780637GCGTTGCTGATTTGGGATGACCGTCATCAATGCCGGGCGCTCTATTCC
Yersinia enterocolitica subsp. enterocolitica strain NCTC12982 genome assembly, chromosome: 1.
LR590469.1:1451053-1451070
AGCCCCTAAATCCAGTACCACAGTTTTGCT1451053GCGTTGCTGATTTGGGATGACCGTCATCAATGCCGGGCGCTCTATTCC
Helicoverpa zea isolate GA-R chromosome 13.
CP089900.1:5304467-5304484
ATAATAGATGTCCAAAAAGTAAGACCCTTC5304467GCGTTGCTGATTTGGGATTTAAGATAGAAGATTTTTCAAGTTTTGCTC
Rhagonycha fulva genome assembly, chromosome: 3.
HG996556.1:37414861-37414878
CGTTAGTAATTTTTACCCCATTTTCAGATG37414861GCGTTGCTGATTTGGGATTACTATTTTTTAAAATTAACAAATAAACCT
Ceriagrion tenellum genome assembly, chromosome: 9.
OY720641.1:130783367-130783384
TTTTCCAGCGTTCTCAGAGCAGGTTCCCAA130783367GCGTTGCTGATTTGGGATACCTTTGTCTAGGTTGAAATTATTTTTCTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATCCCAAATCAGCAACGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCCCAAATCAGCAACGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.221 | 0.212 | search_plus_done; http://172.18.8.135:50400/match?q=ATCCCAAATCAGCAACGC&k=0&no_gap=0&offset=0&limit=50
0.352 | 0.130 | search_minus_done; http://172.18.8.135:50400/match?q=GCGTTGCTGATTTGGGAT&k=0&no_gap=0&offset=0&limit=20
0.366 | 0.014 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).