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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:05:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:3849124-3849144
CTCATGCAATTGTCTTCAACATTACCCAAC3849124ATCCCACAGCTTCTGTTTTTGCTCTCTCTCTCTCTCTCTCTCTAAAATACC
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:3922962-3922982
CTCATGCAATTGTCTTCAACATTACCCAAC3922962ATCCCACAGCTTCTGTTTTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:3820460-3820480
CTCATGCAATTGTCTTCAACATTACCCAAC3820460ATCCCACAGCTTCTGTTTTTGCTCTCTCTCTCTCTCTCTCTCTCTATAAAA
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141983.1:3882269-3882289
CTCATGCAATTGTCTTCAACATTACCCAAC3882269ATCCCACAGCTTCTGTTTTTGCTCTCTCTCTCTCTCTCTCTCTAAAATACC
Malus x robusta genome assembly, chromosome: 15.
OY720339.1:3828779-3828799
CTCATGCAATTGTCTTCAACATTACCCAAC3828779ATCCCACAGCTTCTGTTTTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Crataegus laevigata genome assembly, chromosome: 16.
OY756953.1:4082168-4082188
CTCATGCAATTGTCTTCAACATTACCCAAC4082168ATCCCACAGCTTCTGTTTTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Deilephila porcellus genome assembly, chromosome: 5.
LR999975.1:11156089-11156109
TATTTTCCTAACGATCTCCGAAAACATACT11156089ATCCCACAGCTTCTGTTTTTGTTCGTCTTCATTTATGAATTCCACTTCTAA
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:27957415-27957435
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG27957415CAAAAACAGAAGCTGTGGGATGTTGGGTAATGTTGAAGACAATTGCATGAG
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:24420022-24420042
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG24420022CAAAAACAGAAGCTGTGGGATGTTGGGTAATGTTGAAGACAATTGCATGAG
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:26431490-26431510
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG26431490CAAAAACAGAAGCTGTGGGATGTTGGGTAATGTTGAAGACAATTGCATGAG
Malus domestica genome assembly, chromosome: 14.
OU696690.1:27761249-27761269
GGTATTTTAGAGAGAGAGAGAGAGAGAGAG27761249CAAAAACAGAAGCTGTGGGATGTTGGGTAATGTTGAAGACAATTGCATGAG
Malus domestica genome assembly, chromosome: 14.
OU744555.1:28486434-28486454
GGTATTTTAGAGAGAGAGAGAGAGAGAGAG28486434CAAAAACAGAAGCTGTGGGATGTTGGGTAATGTTGAAGACAATTGCATGAG
Malus domestica genome assembly, chromosome: 14.
OU744966.1:28516740-28516760
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG28516740CAAAAACAGAAGCTGTGGGATGTTGGGTAATGTTGAAGACAATTGCATGAG
Malus domestica genome assembly, chromosome: 14.
OU745004.1:28395994-28396014
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG28395994CAAAAACAGAAGCTGTGGGATGTTGGGTAATGTTGAAGACAATTGCATGAG
Pyrus communis genome assembly, chromosome: 13.
OY757080.1:22895697-22895717
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG22895697CAAAAACAGAAGCTGTGGGATGTTGGGTAATGTTGAAGACAATTGCATGAG
Deilephila elpenor genome assembly, chromosome: 6.
OX457100.1:4862765-4862785
TTAGAAGTGGAATTCATGAATGAAGACGAA4862765CAAAAACAGAAGCTGTGGGATAGTATGTTTTCGGAGATCGTTAGGAAAGTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATCCCACAGCTTCTGTTTTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCCCACAGCTTCTGTTTTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.188 | 0.179 | search_plus_done; http://172.18.8.135:50400/match?q=ATCCCACAGCTTCTGTTTTTG&k=0&no_gap=0&offset=0&limit=50
0.300 | 0.112 | search_minus_done; http://172.18.8.135:50400/match?q=CAAAAACAGAAGCTGTGGGAT&k=0&no_gap=0&offset=0&limit=43
0.307 | 0.006 | cgi_end;

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