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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:01:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Raphanus sativus var. sativus RNA, contig: WG3_20719.
FX658546.1:1094-1113
AAGTGACCCCCCGGATAAGGAGGGAAGCGG1094ATCCCAGCAGGTGAGATGAGGGAGATCTCTTGAGGAGGGTTGTTGTTGCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_6235.
FX791385.1:1128-1147
AAGTGACCCCCCGGATAAGGAGGGAAGCGG1128ATCCCAGCAGGTGAGATGAGGGAGATCTCTTGAGGAGGGTTGTTGTTGCA
TSA: Raphanus sativus RS25682 mRNA sequence.
JT810229.1:1152-1171
AACTGACCCCCCGGATAAGGAGGGAAGCGG1152ATCCCAGCAGGTGAGATGAGGGAGATCTCTTGAGGAGGGTTGTTGTTGCA
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:11657294-11657313
AAGTGACCCCCCGGATAAGGAGGGAAGCGG11657294ATCCCAGCAGGTGAGATGAGGGAGATCTCTTGAGGAGGGTTGTTGTTGCA
RS2CT14TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX897314.1:47-66
TTCTGCAACAACCCTCCTCAAGACATCTCC47CTCATCTCACCTGCTGGGATCCGCTTCCCTCCTTATCCGGGGGGTCACTT
RS2CU08TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX897384.1:396-415
TGCAACACCAACCCTCCTCAAGAGATCTCC396CTCATCTCACCTGCTGGGATCCGCTTCCCTCCTTATCCGGGGGGTCAGTT
Raphanus sativus mRNA, clone: RSCL11N20, 5' end sequence.
FY436809.1:367-386
TGCAACAACAACCCTCCTCAAGAGATCTCC367CTCATCTCACCTGCTGGGATCCGCTTCCCTCCTTATCCGGGGGGTCACTT
Raphanus sativus mRNA, clone: RSCS07G13, 5' end sequence.
FY448399.1:141-160
TGCAACAACAACCCTCCTCAAGAGATCTCC141CTCATCTCACCTGCTGGGATCCGCTTCCCTCCTTATCCGGGGGGTCACTT
Raphanus sativus mRNA, clone: RSCS08O17, 5' end sequence.
FY448912.1:243-262
TGCAACAACAACCCTCCTCAAGAGATCTCC243CTCATCTCACCTGCTGGGATCCGCTTCCCTCCTTATCCGGGGGGTCACTT
Raphanus sativus mRNA, clone: RSCS14I02, 5' end sequence.
FY450902.1:404-423
TGCAACAACAACCCTCCTCAAGAGATCTCC404CTCATCTCACCTGCTGGGATCCGCTTCCCTCCTTATCCGGGGGGTCACTT
Raphanus sativus mRNA, clone: RSCS23N18, 5' end sequence.
FY454256.1:424-443
TGCAACAACAACCCTCCTCAAGAGATCTCC424CTCATCTCACCTGCTGGGATCCGCTTCCCTCCTTATCCGGGGGGTCACTT
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:32375656-32375675
TGCAACAACAACCCTCCTCAAGAGATCTCC32375656CTCATCTCACCTGCTGGGATCCGCTTCCCTCCTTATCCGGGGGGTCACTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATCCCAGCAGGTGAGATGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCCCAGCAGGTGAGATGAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.455 | 0.446 | search_plus_done; http://172.18.8.135:50400/match?q=ATCCCAGCAGGTGAGATGAG&k=0&no_gap=0&offset=0&limit=50
1.431 | 0.976 | search_minus_done; http://172.18.8.135:50400/match?q=CTCATCTCACCTGCTGGGAT&k=0&no_gap=0&offset=0&limit=46
1.436 | 0.005 | cgi_end;

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