GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 07:23:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Erinaceus europaeus genome assembly, chromosome: 1.
OX485810.1:108013309-108013328
TGCAAGTGGTTGATCTTTATTTCTCCCATG108013309ATCCCCACCCTTGTGTCATATGAGCAGAAAAGTGGGTCCTCTTGTGGCTT
Phalacrocorax aristotelis genome assembly, chromosome: 18.
OX451241.1:7176127-7176146
TTGGGGTTTCCCAGCGATTTGCCATCACCC7176127ATCCCCACCCTTGTGTCATATTCCCTGCTGGTGGCCCCCCCAGGAGACCC
Phalacrocorax carbo genome assembly, chromosome: 17.
OY997619.1:7840494-7840513
TTGGGGTTTCCCAGCGATTTGCCATCACCC7840494ATCCCCACCCTTGTGTCATATTCCCTGGTGGTGGCCCCCCCAGGAGACCC
TSA: Cajanus cajan cultivar Asha contig15017.Asha mRNA sequence.
EZ662881.1:214-233
ATGTATTCATCTCTGAATTTAGCAACAGGC214ATCCCCACCCTTGTGTCATAGCCAAGTTCAGTTGAAGCAACCCTTGTTAC
ICPM1F11 Microsatellite enriched genomic DNA library of pigeonpea Cajanus cajan genomic clone ICPM1F11 5', genomic survey sequence.
FI131389.1:159-178
ATGTATTCATCTCTGAATTTAGCAACAGGC159ATCCCCACCCTTGTGTCATAGCCAAGTTCAGTTGAAGCAACCCTTGTTAC
Aphrophora alni genome assembly, chromosome: 10.
OY740775.1:8522535-8522554
ATTTCTTTAATCTCCTTTGATTAAAAAACT8522535ATCCCCACCCTTGTGTCATATTGTGTAATAGTAGCCAAAAAAACAAAGAT
Anabas testudineus genome assembly, chromosome: 12.
LR132041.1:5369382-5369401
CATTGTCCATTGTTCATGTCCTCTGTAATC5369382TATGACACAAGGGTGGGGATATCAGAGCCAGGAAGAAAGCCTGCAAAAAA
TSA: Cajanus cajan cultivar UPAS 120 contig11856.UPAS mRNA sequence.
EZ629573.1:58-77
GTAACAAGGGTTGCTTCAACTGAACTTGGC58TATGACACAAGGGTGGGGATGCCTGTTGCTAAATTCAGAGATGAATACAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCCCCACCCTTGTGTCATA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCCCCACCCTTGTGTCATA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.158 | 0.148 | search_plus_done; http://172.18.8.135:50400/match?q=ATCCCCACCCTTGTGTCATA&k=0&no_gap=0&offset=0&limit=50
0.184 | 0.026 | search_minus_done; http://172.18.8.135:50400/match?q=TATGACACAAGGGTGGGGAT&k=0&no_gap=0&offset=0&limit=44
0.185 | 0.001 | cgi_end;

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