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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2026-03-07 19:41:24, GGGenome : DDBJ release 139.0 (Sep, 2025)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Lactuca sativa isolate DNAHIFI_1 chromosome 2.
CP154642.1:63816260-63816279
GGCATTGAGACTAATCCGGTTTGCCCTTCA63816260ATCCGACACGTTTCTTTTGGTTAGTTCATGTAGTACAGCGAAAGAAATCT
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:34625870-34625889
TGGAGCTATAGAGATAGGATTCGGATCCGG34625870ATCCGACACGTTTCTTTTGGTGGTGGGTTTCTCTTTGTCGGCGGTTTGGG
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:34625870-34625889
TGGAGCTATAGAGATAGGATTCGGATCCGG34625870ATCCGACACGTTTCTTTTGGTGGTGGGTTTCTCTTTGTCGGCGGTTTGGG
RS3F168TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD578455.1:284-303
CCCAAACCGCCGACAAAGAGAAACCCACCA284CCAAAAGAAACGTGTCGGATCCGGATCAAGATCCGAATCCTATTTCTATA
Raphanus sativus mRNA, clone: RSCS04E10, 5' end sequence.
FY447318.1:276-295
CCCAAACCGCCGACAAAGAGAAACCCACCA276CCAAAAGAAACGTGTCGGATCCGGATCAAGATCCGAATCCTATTTCTATA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_28261.
FX673302.1:278-297
CCCAAACCGCCGACAAAGAGAAACCCACCA278CCAAAAGAAACGTGTCGGATCCGGATCCGAATCCTATCTCTATAGCTCCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_9337.
FX753216.1:277-296
CCCAAACCGCCGACAAAGAGAAACCCACCA277CCAAAAGAAACGTGTCGGATCCGGATCCGAATCCTATCTCTATAGCTCCA
Arctium minus genome assembly, chromosome: 3.
OX941082.1:161986174-161986193
TTTGATTACTAGTCATATGCTTCTTCGGTC161986174CCAAAAGAAACGTGTCGGATTAAACGTAAGTGTTCTAAATACTATCTAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATCCGACACGTTTCTTTTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCCGACACGTTTCTTTTGG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.829 | 0.820 | search_plus_done; http://172.18.8.135:50900/match?q=ATCCGACACGTTTCTTTTGG&k=0&no_gap=0&offset=0&limit=50
1.332 | 0.502 | search_minus_done; http://172.18.8.135:50900/match?q=CCAAAAGAAACGTGTCGGAT&k=0&no_gap=0&offset=0&limit=47
1.335 | 0.003 | cgi_end;

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