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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-03-14 20:59:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:34625870-34625889
TGGAGCTATAGAGATAGGATTCGGATCCGG34625870ATCCGACACGTTTCTTTTGGTGGTGGGTTTCTCTTTGTCGGCGGTTTGGG
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:34625870-34625889
TGGAGCTATAGAGATAGGATTCGGATCCGG34625870ATCCGACACGTTTCTTTTGGTGGTGGGTTTCTCTTTGTCGGCGGTTTGGG
RS3F168TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD578455.1:284-303
CCCAAACCGCCGACAAAGAGAAACCCACCA284CCAAAAGAAACGTGTCGGATCCGGATCAAGATCCGAATCCTATTTCTATA
Raphanus sativus mRNA, clone: RSCS04E10, 5' end sequence.
FY447318.1:276-295
CCCAAACCGCCGACAAAGAGAAACCCACCA276CCAAAAGAAACGTGTCGGATCCGGATCAAGATCCGAATCCTATTTCTATA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_28261.
FX673302.1:278-297
CCCAAACCGCCGACAAAGAGAAACCCACCA278CCAAAAGAAACGTGTCGGATCCGGATCCGAATCCTATCTCTATAGCTCCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_9337.
FX753216.1:277-296
CCCAAACCGCCGACAAAGAGAAACCCACCA277CCAAAAGAAACGTGTCGGATCCGGATCCGAATCCTATCTCTATAGCTCCA
Arctium minus genome assembly, chromosome: 3.
OX941082.1:161986174-161986193
TTTGATTACTAGTCATATGCTTCTTCGGTC161986174CCAAAAGAAACGTGTCGGATTAAACGTAAGTGTTCTAAATACTATCTAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATCCGACACGTTTCTTTTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCCGACACGTTTCTTTTGG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.180 | 0.171 | search_plus_done; http://172.18.8.135:50400/match?q=ATCCGACACGTTTCTTTTGG&k=0&no_gap=0&offset=0&limit=50
0.549 | 0.369 | search_minus_done; http://172.18.8.135:50400/match?q=CCAAAAGAAACGTGTCGGAT&k=0&no_gap=0&offset=0&limit=48
0.553 | 0.003 | cgi_end;

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