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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:07:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Chorispora bungeana CK_00575 mRNA sequence.
JW988641.1:13-31
ATCGAAGTAGTA13ATCGGCGCTGGTTATGTCATCAGCGACATCAGCATTGTCACCGGCATCG
TSA: Chorispora bungeana T_12059 mRNA sequence.
KA048889.1:13-31
ATCGAAGTAGTA13ATCGGCGCTGGTTATGTCATCAGCGACATCAGCATTGTCACCGGCATCG
BOT01-46M13TF BOT01 Brassica oleracea genomic clone BOT01-46M13, genomic survey sequence.
FI712775.1:846-864
ACCGAAATGGGAGTAAGAATCGAAGTAGTA846ATCGGCGCTGGTTATGTCATCAGCTACATCGGCATCGCACATTGTTTCA
Raphanus sativus DNA, clone: RSDH12P16_FP-1.
GA878630.1:549-567
ACCGAAATGGGAGTAAGAATCGAAGTAGTA549ATCGGCGCTGGTTATGTCATCAGCTACATCTGCATCGCACATTGTTTCA
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 66 unordered pieces.
FJ789649.1:38717-38735
ACCGAAATGGGAGTAAGAATCGAAGTAGTA38717ATCGGCGCTGGTTATGTCATCAGCGACATCGGCATCGCACATTGTTTCA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:35672208-35672226
ACCGAAATGGGAGTAAGAATCGAAGTAGTA35672208ATCGGCGCTGGTTATGTCATCAGCGACATCGGCATCGCACATTGTTTCA
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:58706604-58706622
ACCGAAATGGGAGTAAGAATCGAAGTAGTA58706604ATCGGCGCTGGTTATGTCATCAGCTACATCGGCATCGCACATTGTTTCA
Arabidopsis arenosa genome assembly, chromosome: 3.
LR999453.1:20189165-20189183
ACCAAAATGAGAGTAAGAGTCGAAGTAGTA20189165ATCGGCGCTGGTTATGTCATCAGCAACATCGGCATTGTTGTCACTTCCA
Draba incana genome assembly, chromosome: 6.
OY755207.1:38647609-38647627
ACCGAAATGTGAGTAAGAATCGAAGTAGTA38647609ATCGGCGCTGGTTATGTCATCGGAGACATCGGCGATTTCACCTCCTGCG
Draba incana genome assembly, chromosome: 12.
OY755213.1:1127440-1127458
ACCGAAATGTGAGTAAGAATCGAAGTAGTA1127440ATCGGCGCTGGTTATGTCATCGGAGACATCGGCAATTTCACCTCCTGCG
Draba incana genome assembly, chromosome: 14.
OY755215.1:32430925-32430943
CAACGTTCACAAGTACGAATCGAATTAGTA32430925ATCGGCGCTGGTTATGTCAACGGCGACATCGACAATTTGATCGGAGCCG
Lepidium didymum genome assembly, chromosome: 11.
OY986983.1:18619955-18619973
ACCAAAATGGGAGTAAGAATCGAAGTAGTA18619955ATCGGCGCTGGTTATGTCATCAGCGACATTCGCATTGTCGTCACCTCCA
Brassica oleracea var. viridis mRNA, clone: KALE-075N24, 5' end sequence.
DK484561.1:163-181
TGAAACAATGTGCGATGCCGATGTAGCTGA163TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
Brassica oleracea var. viridis mRNA, clone: KALE-082A03, 5' end sequence.
DK486906.1:143-161
TGAAACAATGTGCGATGCCGATGTAGCTGA143TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
BR127092 normalized flower cDNA library NRFB Brassica rapa subsp. pekinensis cDNA clone NRFB-011H12 5', mRNA sequence.
EX115573.1:155-173
TGAAACAATGTGCGATGCCGATGTCGCTGA155TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
RR2DR08TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY907035.1:188-206
TGAAACAATGTGCGATGCAGATGTAGCTGA188TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
BNAOV1GH_T3_006_A05_12JULY2007_047 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR440122.1:180-198
TGAAACAATGTGCGATGCCGATGTCGCTGA180TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_10757.
FX700695.1:212-230
TGAAACAATGTGCGATGCCGATGTCGCTGA212TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_60239.
FX752205.1:193-211
TGAAACAATGTGCGATGCCGATGTCGCTGA193TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022C05, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC189265.2:7403-7421
TGAAACAATGTGCGATGCCGATGTCGCTGA7403TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:2731475-2731493
TGAAACAATGTGCGATGCCGATGTCGCTGA2731475TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
Brassica napus genome assembly, chromosome: A07.
HG994361.1:697692-697710
TGAAACAATGTGCGATGCCGATGTCGCTGA697692TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
Brassica napus genome assembly, chromosome: C07.
HG994371.1:3012163-3012181
TGAAACAATGTGCGATGCCGATGTAGCTGA3012163TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
Brassica rapa genome, scaffold: A07.
LR031574.1:759614-759632
TGAAACAATGTGCGATGCCGATGTCGCTGA759614TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:4342812-4342830
TGAAACAATGTGCGATGCCGATGTTGCTGA4342812TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:21735051-21735069
TGAAACAATGTGCGATGCAGATGTAGCTGA21735051TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:761701-761719
TGAAACAATGTGCGATGCCGATGTCGCTGA761701TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:21735051-21735069
TGAAACAATGTGCGATGCAGATGTAGCTGA21735051TGACATAACCAGCGCCGATTACTACTTCGATTCTTACTCCCATTTCGGT
Lithosia quadra genome assembly, chromosome: 19.
OY754892.1:8038118-8038136
CAAGGCGTACGGCTTTAATCGGTCCGAGTC8038118TGACATAACCAGCGCCGATAGCCAACAAGGGTAGTATCTGTGGGGATTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATCGGCGCTGGTTATGTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCGGCGCTGGTTATGTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.414 | 0.405 | search_plus_done; http://172.18.8.135:50400/match?q=ATCGGCGCTGGTTATGTCA&k=0&no_gap=0&offset=0&limit=50
0.941 | 0.528 | search_minus_done; http://172.18.8.135:50400/match?q=TGACATAACCAGCGCCGAT&k=0&no_gap=0&offset=0&limit=38
0.953 | 0.012 | cgi_end;

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