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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 06:16:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Solanum tuberosum cultivar Solyntus chromosome 10.
CP055243.1:43762447-43762473
ATCAGTTTAGTGGTTCTTTCACCTTTGAAT43762447ATCGTGGGTATTGAGGTTCCAAAGTAGACAGTTCGCCGTGGCAGATTCCACAGCCAA
Solanum dulcamara genome assembly, chromosome: 12.
OX359263.1:5028522-5028548
ATCAGTTTAGTGGTTCTTTCACCTTTGAAT5028522ATCGTGGGTATTGAGGTTCCAAAGTAGACAGTCCGCCGTGGGAGATTCCACAGCCAA
KS12064G09 KS12 Capsicum annuum cDNA, mRNA sequence.
CA526034.1:579-605
TTGGCTGTGGAATCTCCCACGACGGACTGT579CTACTTTGGAACCTCAATACCCACGAT
17273 Swollen Stolon Solanum tuberosum cDNA, mRNA sequence.
CK717433.1:677-703
TGGCTGTGGAATCTCCCANCGGCGAACTGT677CTACTTTGGAACCTCAATACCCACGATATTCAAAGGTTTAAACACAGAAAGTATCCA
68984.1 Mixed Floral Solanum tuberosum cDNA clone 68984 5', mRNA sequence.
CV502583.1:371-397
TTGGCTGTGGAATCTGCCACGGCGAACTGT371CTACTTTGGAACCTCAATACCCACGATATTCAAAGGTTTAAACACAGAAAGTATCCA
17273.2 Swollen Stolon Solanum tuberosum cDNA clone 17273 5', mRNA sequence.
DR034532.1:680-706
TTGGCTGTGGAATCTCCCACGGCGAACTGT680CTACTTTGGAACCTCAATACCCACGATATTCAAAGGTTAAACACAGAAAGTATCCAA
TSA: Physalis peruviana Php00a01626.08812 mRNA sequence.
JO132904.1:5437-5463
TTGGCTGTGGAATCTCCCACGGCGAACTGT5437CTACTTTGGAACCTCAATACCCACGATATTCAAAGGGCTAAACACAGAGAGTATCCA
TSA: Physalis peruviana Php00a01626.08813 mRNA sequence.
JO132905.1:5442-5468
TTGGCTGTGGAATCTCCCACGGCGAACTGT5442CTACTTTGGAACCTCAATACCCACGATATTCAAAGGGCTAAACACAGAGAGTATCCA
TSA: Capsicum annuum MGMT_Contig25067, mRNA sequence.
JW075311.1:5637-5663
TTGGCTGTGGAATCTCCCACGACGGACTGT5637CTACTTTGGAACCTCAATACCCACGATATTCAAAGGCCTAAACACAGAAAGTATCCA
LuSp234D09_1061063977001_TV POTATO-B-01-100-110KB Solanum phureja genomic clone LuSp234D09, genomic survey sequence.
GS532922.1:423-449
TTGGCTGTGGAATCTCCCACGGCGGACTGT423CTACTTTGGAACCTCAATACCCACGATATTCAAAGGTGAAAGAACCACTAAACTGAT
1061064179944_TF POTATO-F-03-40KB Solanum phureja genomic clone 1061064179944, genomic survey sequence.
GS746253.1:475-501
TTGGCTGTGGAATCTCCCACGGCGGACTGT475CTACTTTGGAACCTCAATACCCACGATATTCAAAGGTGAAAGAACCACTAAACTGAT
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:226125373-226125399
TTGGCTGTGGAATCTCCCACGACGGACTGT226125373CTACTTTGGAACCTCAATACCCACGATATTCAAAGGTGAAAGAATCACTAAACTGAT
Solanum tuberosum cultivar P8 chromosome 10.
CP046683.1:55551505-55551531
TTGGCTGTGGAATCTCCCACGGCGRACYGT55551505CTACTTTGGAACCTCAATACCCACGATATTCAAAGGTGAAAGAACCACTAAACTGAT
Solanum tuberosum cultivar MSH/14-112 chromosome 10.
CP046694.1:55551673-55551699
TTGGCTGTGGAATCTCCCACGGCGRACYGT55551673CTACTTTGGAACCTCAATACCCACGATATTCAAAGGTGAAAGAACCACTAAACTGAT
Solanum pinnatisectum cultivar CGN17745 chromosome 10.
CP047557.1:55543451-55543477
TTGGCTGTGGAATCTCCCACGGCGGACCGT55543451CTACTTTGGAACCTCAATACCCACGATATTCAAAGGTGAAAGAACCACTAAACTGAT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 10.
CP124710.1:122092636-122092662
TTGGCTGTGGAATCTCCCACGGCGGACTGT122092636CTACTTTGGAACCTCAATACCCACGATATTCAAAGGTGAAAGAACCACTAAACTGAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:230938251-230938277
TTGGCTGTGGAATCTCCCACGACGGACTGT230938251CTACTTTGGAACCTCAATACCCACGATATTCAAAGGTGAAAGAATCACTAAACTGAT
Solanum verrucosum cultivar 11H23 chromosome 10.
CP133621.1:53191471-53191497
TTGGCTGTGGAATCTCCCACGGCGGACTGT53191471CTACTTTGGAACCTCAATACCCACGATATTCAAAGGTGAAAGAACCACTAAACTGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCGTGGGTATTGAGGTTCCAAAGTAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCGTGGGTATTGAGGTTCCAAAGTAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.167 | 0.159 | search_plus_done; http://172.18.8.135:50400/match?q=ATCGTGGGTATTGAGGTTCCAAAGTAG&k=0&no_gap=0&offset=0&limit=50
0.435 | 0.268 | search_minus_done; http://172.18.8.135:50400/match?q=CTACTTTGGAACCTCAATACCCACGAT&k=0&no_gap=0&offset=0&limit=48
0.446 | 0.011 | cgi_end;

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