GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 12:11:04, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:218955-218974
TCATCAACTTGGCCAATCATCTTTACTCCT218955ATCGTTGATCTACCACCGGATAAATCTCTCATTCCCTGCAGAAAAAAAAA
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:55941271-55941290
CTTTTTTTTCTGCAGGGAATGAGAGATTTA55941271TCCGGTGGTAGATCAACGATAGGAGTAAAGATGATTGGCCAAGTTGATGA
Brassica napus cultivar Xiang5A chromosome 7.
CP151902.1:36210900-36210919
TTTTTTTTTCTGCAGGGAATGAGAGATTTA36210900TCCGGTGGTAGATCAACGATAGGAGTAAAGATGATTGGCCAAGTTGATGA
Brassica napus cultivar Xiang5A chromosome 16.
CP151911.1:55941271-55941290
CTTTTTTTTCTGCAGGGAATGAGAGATTTA55941271TCCGGTGGTAGATCAACGATAGGAGTAAAGATGATTGGCCAAGTTGATGA
Brassica napus genome assembly, chromosome: A07.
HG994361.1:29171787-29171806
TTTTTTTTTCTGCAGGGAATGAGAGATTTA29171787TCCGGTGGTAGATCAACGATAGGAGTAAAGATGATTGGCCAAGTTGATGA
Brassica napus genome assembly, chromosome: C06.
HG994370.1:49896604-49896623
CTTTTTTTTCTGCAGGGAATGAGAGATTTA49896604TCCGGTGGTAGATCAACGATAGGAGTAAAGATGATTGGCCAAGTTGATGA
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:46202856-46202875
CTTTTTTTTCTGCAGGGAATGAGAGATTTA46202856TCCGGTGGTAGATCAACGATAGGAGTAAAGATGATTGGCCAAGTTGATGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCGTTGATCTACCACCGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCGTTGATCTACCACCGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.227 | 0.218 | search_plus_done; http://172.18.8.135:50800/match?q=ATCGTTGATCTACCACCGGA&k=0&no_gap=0&offset=0&limit=50
0.327 | 0.100 | search_minus_done; http://172.18.8.135:50800/match?q=TCCGGTGGTAGATCAACGAT&k=0&no_gap=0&offset=0&limit=49
0.331 | 0.004 | cgi_end;

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