GGGenome | Results

2025-04-06 07:31:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

020904AARA012561HT (AARA) Royal Gala partially senescing leaf Malus domestica cDNA clone AARA012561, mRNA sequence.
CN877992.1:499-519

GGCACTTCACATTGATCCAGGTCACGCACC499ATCTAAATGGGCAACATGCAGTGATGTGGTAAATATGACTTGGAAGGATTC

030203ABPB003617HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB003617, mRNA sequence.
CN917946.1:463-483

GGCACTTCACATTGATCCAGGTCACGCACC463ATCTAAATGGGCAACATGCAGTGATGTGGTAAGTATGACTTGGAAGGATTC

020801AVBC010057HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC010057, mRNA sequence.
CN946788.1:393-413

GGCACTTCACATTGATCCAGGTCACGCACC393ATCTAAATGGGCAACATGCAGTGATGTGGTAAGTATGACTTGGAAGGATTC

ff_07A04_AA5 Md_fruit-fruit_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD254831.1:1-21

1ATCTAAATGGGCAACATGCAGTGATGTGGTAAGTATGACTTGGAAGGATTC

Mdfws2070E21.g1 Apple_EST_Mdfws Malus domestica cDNA 5' similar to sp|P55748|CP22_HORVU Serine carboxypeptidase II-2 precursor (CP-MII.2) gb|AAB31590.1| CP-MII.2=serine carboxypeptidase [Hordeum vulga
GO509960.1:159-179

GGCACTTCACGTTGATCCAGGTCACGCACC159ATCTAAATGGGCAACATGCAGTGATGTGGTAAGTATGACTTGGAAGGATTC

Mdfrfu3512E14.g1 Apple_EST_Mdfrfu Malus domestica cDNA 5' similar to sp|P55748|CP22_HORVU Serine carboxypeptidase II-2 precursor (CP-MII.2) gb|AAB31590.1| CP-MII.2=serine carboxypeptidase [Hordeum vul
GO535368.1:33-53

AATTCCGTTGCTGTCGTTTTTTTACGCACC33ATCTAAATGGGCAACATGCAGTGATGTGGTAAGTATGACTTGGAAGGATTC

Mdfwj2081G22.g1 Apple_EST_Mdfwj Malus domestica cDNA 5' similar to ref|NP_567854.1| serine carboxypeptidase -related [Arabidopsis thaliana] gb|AAK93635.1| putative serine carboxypeptidase II [Arabidop
GO543294.1:166-186

GGCACTTCACGTTGATCCAGGTCACGCACC166ATCTAAATGGGCAACATGCAGTGATGTGGTAAGTATGACCTGGAAGGATTC

TSA: Pyrus communis mRNA, contig: lc2672.
FX611259.1:12-32

GATCACGCACC12ATCTAAATGGGCAACATGCAGTGATGTGGTAGGTATGACTTGGAAGGATTC

Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:11128195-11128215

GGCACTTCACGTTGATCCAGGTCACGCACC11128195ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT

Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:10086837-10086857

GGCACTTCACGTTGATCCAGGTCACACACC10086837ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT

Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:10862532-10862552

GGCACTTCACGTTGATCCAGGTCACGCACC10862532ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT

Malus domestica genome assembly, chromosome: 15.
OU696691.1:11087687-11087707

GGCACTTCACGTTGATCCAGGTCACGCACC11087687ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT

Malus domestica genome assembly, chromosome: 15.
OU744556.1:11154473-11154493

GGCACTTCACGTTGATCCAGGTCACGCACC11154473ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT

Malus domestica genome assembly, chromosome: 15.
OU744967.1:11103735-11103755

GGCACTTCACGTTGATCCAGGTCACGCACC11103735ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT

Malus domestica genome assembly, chromosome: 15.
OU745005.1:10891807-10891827

GGCACTTCACGTTGATCCAGGTCACGCACC10891807ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT

Geum urbanum genome assembly, chromosome: 1.
OX326997.1:433731-433751

GGCCCTTCATGTTGATCAACGTCATTCACC433731ATCTAAATGGGCAACATGCAGGTATAACAGACTATCTCTTCTCAGTGTCTT

Rosa rugosa genome assembly, chromosome: 1.
OY288191.1:591792-591812

GGCCCTTCATGTTGATCGACACCATGCACC591792ATCTAAATGGGCAACATGCAGGTATAACTCAATCTCTTATCTCTCTTCCAT

Pyrus communis genome assembly, chromosome: 1.
OY757068.1:9246409-9246429

GGCACTTCATGTTGATCCAGATCACGCACC9246409ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT

TSA: Pyrus x bretschneideri Unigene80831_XinShao mRNA sequence.
JR665355.1:370-390

GAATCCTTCCAAGTCATACTTACCACATCA370CTGCATGTTGCCCATTTAGATGGTGCGTGATCTGGATCAACGTGAAGTGCC

Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:41759703-41759723

AAGCAAGAAGCACTTTTTTCAACTGATTAC41759703CTGCATGTTGCCCATTTAGATGGTGCGTGACCTGGATCAACGTGAAGTGCC

Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:45355121-45355141

AAGCATGAAGCACTTTTTTCAACTGATTAC45355121CTGCATGTTGCCCATTTAGATGGTGCGTGACCTGGATCAACGTGAAGTGCC

Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:41384117-41384137

AAGCATGAAGCACTTTTTTCAACTGATTAC41384117CTGCATGTTGCCCATTTAGATGGTGCGTGACCTGGATCAACGTGAAGTGCC

Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:42376301-42376321

AAGCATGAAGCACTTTTTTCAACTGATTAC42376301CTGCATGTTGCCCATTTAGATGGTGCGTGACCTGGATCAACGTGAAGTGCC

Malus x robusta genome assembly, chromosome: 1.
OY720325.1:41379209-41379229

AAGCATGAAGCACTTTTTTCAACTGATTAC41379209CTGCATGTTGCCCATTTAGATGGTGCGTGACCTGGATCAACGTGAAGTGCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
0.596 | 0.588 | search_plus_done; http://172.18.8.135:50400/match?q=ATCTAAATGGGCAACATGCAG&k=0&no_gap=0&offset=0&limit=50
0.656 | 0.060 | search_minus_done; http://172.18.8.135:50400/match?q=CTGCATGTTGCCCATTTAGAT&k=0&no_gap=0&offset=0&limit=32
0.660 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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