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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 21:22:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 34040 from patent US 7569389.
GP684581.1:451-470
CTCCTCCACACCGACCTCCGATTCGGCGTC451ATCTACAACGACGCCGTCTCGGGAACCGCCAACGTCGGCTGCGTCGGCGA
Sequence 3321 from Patent EP2148885.
HI532349.1:83-102
CTCCTCCATACCGACCTCCGCTTCGGCGTC83ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
Sequence 3321 from patent US 9271455.
HL705684.1:83-102
CTCCTCCATACCGACCTCCGCTTCGGCGTC83ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
Sequence 2642 from patent US 10750711.
MV607753.1:304-323
CTCCTCCATACCGACCTCCGCTTCGGCGTC304ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
Sequence 2642 from patent US 11819027.
OT845789.1:304-323
CTCCTCCATACCGACCTCCGCTTCGGCGTC304ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
se04d01.y1 Gm-c1013 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1013-2522 5' similar to TR:Q55701 Q55701 HYPOTHETICAL 24.5 KD PROTEIN, mRNA sequence.
AW132393.1:282-301
CTCCTCCATACCGACCTCCGCTTCGGCGTC282ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
si50a02.y1 Gm-r1030 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-r1030-2307 5' similar to TR:Q55701 Q55701 HYPOTHETICAL 24.5 KD PROTEIN, mRNA sequence.
AW508160.1:67-86
CTCCTCCACACCGACCTCCGATTCGGCGTC67ATCTACAACGACGCCGTCTCGGGAACCGCCAACGTCGGCTGCGTCGGCGA
sp32d08.y1 Gm-c1042 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1042-2248 5' similar to TR:Q55701 Q55701 HYPOTHETICAL 24.5 KD PROTEIN, mRNA sequence.
BE346889.1:46-65
TCGAGGCCAAGAATTCAAGCCTTCGGCGTC46ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
sr77e01.y1 Gm-c1052 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1052-1777 5' similar to TR:Q55701 Q55701 HYPOTHETICAL 24.5 KD PROTEIN, mRNA sequence.
BE804259.1:36-55
CTCCTCCACACCGACCTCCGATTCGGCGTC36ATCTACAACGACGCCGTCTCGGGAACCGCCAACGTCGGCTGCGTCGGCGA
sag97g12.y1 Gm-c1084 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1084-2255 5' similar to TR:Q55701 Q55701 HYPOTHETICAL 24.5 KD PROTEIN, mRNA sequence.
BI971735.1:356-375
CTCCTCCATACCGACCTCCGCTTCGGCGTC356ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
saj60g02.y1 Gm-c1072 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1072-4155 5' similar to TR:Q55701 Q55701 HYPOTHETICAL 24.5 KD PROTEIN, mRNA sequence.
BM178888.1:348-367
CTCCTCCATACCGACCTCCGCTTCGGCGTC348ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
san68h11.y1 Gm-c1052 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1052-4989 5' similar to TR:Q55701 Q55701 HYPOTHETICAL 24.5 KD PROTEIN, mRNA sequence.
BQ253909.1:355-374
CTCCTCCATACCGACCTCCGCTTCGGCGTC355ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
sao35b01.y1 Gm-c1054 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1054-6193 5' similar to TR:Q55701 Q55701 HYPOTHETICAL 24.5 KD PROTEIN, mRNA sequence.
BQ296847.1:294-313
CTCCTCCATACCGACCTCCGCTTCGGCGTC294ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
sao37b02.y1 Gm-c1054 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1054-6219 5' similar to TR:Q55701 Q55701 HYPOTHETICAL 24.5 KD PROTEIN, mRNA sequence.
BQ297010.1:294-313
CTCCTCCATACCGACCTCCGCTTCGGCGTC294ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
sr69e04.y1 Gm-c1052 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1052-1015 5' similar to TR:Q55701 Q55701 HYPOTHETICAL 24.5 KD PROTEIN, mRNA sequence.
BU090195.1:407-426
CTCCTCCATACCGACCTCCGCTTCGGCGTC407ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
Glycine max cDNA clone: GMFL01-19-M09, 5'end.
BW662067.1:283-302
CTCCTCCATACCGACCTCCGCTTCGGCGTC283ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
sat29h03.y1 Gm-c1056 Glycine soja cDNA clone SOYBEAN CLONE ID: Gm-c1056-3030 5' similar to TR:Q55701 Q55701 HYPOTHETICAL 24.5 KD PROTEIN, mRNA sequence.
CA782522.1:102-121
CTCCTCCATACCGACCTCCGCTTCGGCGTC102ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
Glycine max cDNA, clone: GMFL01-19-M09.
AK285984.1:283-302
CTCCTCCATACCGACCTCCGCTTCGGCGTC283ATCTACAACGACGCCGTCTCGGGCACCGCCGAGGTCGGCTGCGTGGGCGA
gmrtDrNS01_22-C_M13R_B09_077.s3 Water stressed 48h segment 1 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.
CX707245.1:749-768
TCGCCGACGCAGCCGACGTTGGCGGTTCCC749GAGACGGCGTCGTTGTAGATGACGCCGAATCGGAGGTCGGTGTGGAGGAG
gmrtDrNS01_24-C_M13R_C11_091.s3 Water stressed 48h segment 1 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.
CX707438.1:749-768
TCGCCGACGCAGCCGACGTTGGCGGTTCCC749GAGACGGCGTCGTTGTAGATGACGCCGAATCG
Glycine max cultivar Williams 82 chromosome 6.
CP126431.1:2222640-2222659
TCGCCGACGCAGCCGACGTTGGCGGTTCCC2222640GAGACGGCGTCGTTGTAGATGACGCCGAATCGGAGGTCGGTGTGGAGGAG
Glycine max cultivar Williams 82 chromosome 14.
CP126439.1:5842361-5842380
TCGCCCACGCAGCCGACCTCGGCGGTGCCC5842361GAGACGGCGTCGTTGTAGATGACGCCGAAGCGGAGGTCGGTATGGAGGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCTACAACGACGCCGTCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCTACAACGACGCCGTCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.483 | 0.474 | search_plus_done; http://172.18.8.135:50400/match?q=ATCTACAACGACGCCGTCTC&k=0&no_gap=0&offset=0&limit=50
0.577 | 0.094 | search_minus_done; http://172.18.8.135:50400/match?q=GAGACGGCGTCGTTGTAGAT&k=0&no_gap=0&offset=0&limit=32
0.579 | 0.003 | cgi_end;

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