GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 16:21:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 6.
OU383779.1:10375439-10375458
GTACCTGAACGGTCCCTGAGGAAAGCTGAG10375439ATCTCTCTTGGAAGTGTGGGTTTGTGCTTTTCTTATGTCTATCCAAAACA
Lotus japonicus B-129 DNA, chromosome 5, complete sequence.
AP022633.1:58297258-58297277
TTACATCTTACTTCACTATTTTTTATTTTT58297258ATCTCTCTTGGAAGTGTGGGTAGAATGAGTTTTTTTGTCAAAGGTTCAAA
Lotus japonicus B-129 DNA, chromosome 5, complete sequence.
AP022633.1:58306532-58306551
TCACATCTTACTTCACAATTTTTTATTTCT58306532ATCTCTCTTGGAAGTGTGGGTAGAATGAGTGTGAATAAAAAAGCTACTAA
Musa troglodytarum cultivar karat chromosome 8.
CP097510.1:31699883-31699902
CACTTCATTCCCCACTCCGCTAGGTTCACC31699883ATCTCTCTTGGAAGTGTGGGATCAATGACCGGTCTTGCACACAGCACTTC
Oryzias latipes strain Hd-rR chromosome 4 sequence.
CP020668.1:22856468-22856487
TGGTAAAAATGAATTTCACCATTTTTGGCC22856468CCCACACTTCCAAGAGAGATGACACAACAGCAAAAGAAACCATTAAAAAA
Lotus japonicus genomic DNA, chromosome 5, clone: LjT23C14, TM0311.
AP006423.1:5570-5589
TTTAAACCTTTGACAAAAAAACTCATTCTA5570CCCACACTTCCAAGAGAGATAAAAATAAAAAATAGTGAAGTAAGATGTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCTCTCTTGGAAGTGTGGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCTCTCTTGGAAGTGTGGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.099 | 0.091 | search_plus_done; http://172.18.8.135:50400/match?q=ATCTCTCTTGGAAGTGTGGG&k=0&no_gap=0&offset=0&limit=50
0.117 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=CCCACACTTCCAAGAGAGAT&k=0&no_gap=0&offset=0&limit=46
0.118 | 0.001 | cgi_end;

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