GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 19:40:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS24032H08 KS24 Capsicum annuum cDNA, mRNA sequence.
GD120905.1:559-578
TACACACCACAAACACCTCTTTTTCCTACT559ATCTGAAGCTGGGCTCCTTTGTAATTCAGGCTCTGAATTTGCATTTGACT
TSA: Capsicum annuum MGMT_Contig4683, mRNA sequence.
JW054927.1:571-590
TACACACCACAAACACCTCTTTTTCCTACT571ATCTGAAGCTGGGCTCCTTTGTAATTCAGGCTCTGAATTTGCATTTGACT
BJ03007H01 BJ03 Capsicum annuum cDNA 5', mRNA sequence.
CO910566.1:255-274
AGTCAAATGCAAATTCAGAGCCTGAATTAC255AAAGGAGCCCAGCTTCAGATAGTAGGAAAAAGAGGTGTTTGTGGTGTGTA
KS15003D01 KS15 Capsicum annuum cDNA, mRNA sequence.
GD063645.1:218-237
AGTCAAATGCAAATTCAGAGCCTGAATTAC218AAAGGAGCCCAGCTTCAGATAGTAGGAAAAAGAGGTGTTTGTGGTGTGTA
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:198320570-198320589
AGTCAAATGCAAATTCAGAGCCTGAATTAC198320570AAAGGAGCCCAGCTTCAGATAGTAGGAAAAAGAGGTGTTTGTGGTGTGTA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 1.
CP124731.1:197505455-197505474
AGTCAAATGCAAATTCAGAGCCTGAATTAC197505455AAAGGAGCCCAGCTTCAGATAGTAGGAAAAAGAGGTGTTTGTGGTGTGTA
Tetragnatha montana genome assembly, chromosome: 7.
OY796681.1:25975933-25975952
GCATTCAATGAATGGAAGGGAAATTATTTG25975933AAAGGAGCCCAGCTTCAGATTCTCATTCTAGAAACAAGTGTGTTGCTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCTGAAGCTGGGCTCCTTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCTGAAGCTGGGCTCCTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.428 | 0.419 | search_plus_done; http://172.18.8.135:50400/match?q=ATCTGAAGCTGGGCTCCTTT&k=0&no_gap=0&offset=0&limit=50
0.657 | 0.229 | search_minus_done; http://172.18.8.135:50400/match?q=AAAGGAGCCCAGCTTCAGAT&k=0&no_gap=0&offset=0&limit=48
0.660 | 0.003 | cgi_end;

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