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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-03-14 18:17:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_3660.
FX793913.1:1543-1562
TTCTCTAGCTATGTCCCGGACAGATACTCT1543ATCTGCGCTAGAGACACGGTGCATCACTGGTTGTTGTTGTTGTTGTTGTT
TSA: Raphanus sativus RS24364 mRNA sequence.
JT808911.1:1569-1588
TTCTCTAGCTATGTCCCGGACAGATACTCT1569ATCTGCGCTAGAGACACGGTGCATCACTGGTTGTTGTTGTTGTTGTTGTT
Raphanus sativus mRNA, clone: RSCL03C06, 5' end sequence.
FY433891.1:335-354
AACAACAACAACAACAACAACCAGTGATGC335ACCGTGTCTCTAGCGCAGATAGAGTATCTGTCCGGGACATAGCTAGAGAA
Raphanus sativus mRNA, clone: RSCL10M12, 5' end sequence.
FY436454.1:375-394
AACAACAACAACAACAACAACCAGTGATGC375ACCGTGTCTCTAGCGCAGATAGAGTATCTGTCCGGGACATAGCTAGAGAA
Raphanus sativus mRNA, clone: RSCS03F23, 5' end sequence.
FY447014.1:398-417
AACAACAACAACAACAACAACCAGTGATGC398ACCGTGTCTCTAGCGCAGATAGAGTATCTGTCCGGGACATAGCTAGAGAA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_7692.
FX671909.1:334-353
AACAACAACAACAACAACAACCAGTGATGC334ACCGTGTCTCTAGCGCAGATAGAGTATCTGTCCGGGACATAGCTAGAGAA
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:39915590-39915609
AGCAACAACAACAACAACAACCAGTGATGC39915590ACCGTGTCTCTAGCGCAGATAGAGTATCCGTCCGGGACATAGCTAGAGAA
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:39915590-39915609
AGCAACAACAACAACAACAACCAGTGATGC39915590ACCGTGTCTCTAGCGCAGATAGAGTATCCGTCCGGGACATAGCTAGAGAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATCTGCGCTAGAGACACGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCTGCGCTAGAGACACGGT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.322 | 0.313 | search_plus_done; http://172.18.8.135:50400/match?q=ATCTGCGCTAGAGACACGGT&k=0&no_gap=0&offset=0&limit=50
0.694 | 0.372 | search_minus_done; http://172.18.8.135:50400/match?q=ACCGTGTCTCTAGCGCAGAT&k=0&no_gap=0&offset=0&limit=48
0.698 | 0.004 | cgi_end;

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