GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:20:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Podarcis cretensis genome assembly, chromosome: 7.
OX638155.1:38029382-38029401
GCTGTTATACTAAATGCAGATGAACCCAGC38029382ATCTGCTTCTGCTGTTGGTTAGCTCCTTCCCCTTGGCCTGCAGGAGCATA
AGENCOURT_13004291 NIH_MGC_135 Mus musculus cDNA clone IMAGE:30294487 5', mRNA sequence.
CB566520.1:25-44
GGCTGGTCCGGTCCGGATTTCGGG25ATCTGCTTCTGCTGTTGGTTTACATGTTGCCCCTGCCTCGAGTTGGAGTT
Gossypioides kirkii chromosome KI_06.
CP032248.1:33633038-33633057
ATCTGGAGCTCCGCTTGATTCAAGGGTCGG33633038ATCTGCTTCTGCTGTTGGTTTGGTTGTTGTTGCTGTTGCTGCGGCGGCGG
Gossypium raimondii isolate D5-4 chromosome D5_02.
CP032554.1:9258573-9258592
ATCTGGAGCTCCGCTTGATTCAAGGGTCGG9258573ATCTGCTTCTGCTGTTGGTTTGGTTGCTGTGCTGTTGCTGCGGCGGCGGC
Gossypium turneri isolate D10-2 chromosome D10_02.
CP032572.1:10004596-10004615
ATCTGGAGCTCCGCTTGATTCAAGGGTCGG10004596ATCTGCTTCTGCTGTTGGTTTGGTTGCTGTTGCTGTTGCTGCGGCGGCGG
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:66555092-66555111
ATCTGGAGCTCCGCTTGATTCAAGGGTCGG66555092ATCTGCTTCTGCTGTTGGTTTGGTTGCTGTTGCTGTTGCTGTTGCTGCGG
Dasysyrphus albostriatus genome assembly, chromosome: 3.
OX276337.1:20526669-20526688
TGAATCTTACACAATGTGTAGTGCAATTGC20526669ATCTGCTTCTGCTGTTGGTTTATTCTTCTCGGAAAAATACTTATATCGAA
Syrphus vitripennis genome assembly, chromosome: 2.
OY288109.1:26314446-26314465
TTTTTCATTGGAATGAAAATTGATTTTTCA26314446ATCTGCTTCTGCTGTTGGTTATTTTTTTTTTTTTTCAAATGTAAGTATCT
Sepiola atlantica genome assembly, chromosome: 11.
OY744525.1:21459016-21459035
CTTAGCTTTGACCTTGAAAATTGATGGTTA21459016ATCTGCTTCTGCTGTTGGTTTATGTTTTCTTAAGTTACGAAGGAGTACGA
Podarcis lilfordi genome assembly, chromosome: 7.
OX395132.1:54589354-54589373
TATGCTCCTGCAGGCGGAGCGGAAGGAGCA54589354AACCAACAGCAGAAGCAGATGCTGGGTTCATATGCATTTAGTATAACAGC
Falco punctatus genome assembly, chromosome: 1.
OY723433.1:58063767-58063786
AGTAGGCATAGCCTACTGCATCCTGTTTGC58063767AACCAACAGCAGAAGCAGATGCAAAAGCGTGGTATTTGTCATAAGCATTT
GA__Ed0078E03f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0078E03f, mRNA sequence.
BQ405091.1:363-382
CCGCAGCAACAGCAACAGCAACAGCAACCA363AACCAACAGCAGAAGCAGATCCGACCCTTGAATCAAGCGGAGCTCCAGAT
GA__Ed0078G04f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0078G04f, mRNA sequence.
BQ405111.1:363-382
CCGCAGCAACAGCAACAGCAACAGCAACCA363AACCAACAGCAGAAGCAGATCCGACCCTTGAATCAAGCGGAGCTCCAGAT
GR__Eb015D18.r GR__Eb Gossypium raimondii cDNA clone GR__Eb015D18 3', mRNA sequence.
CO114211.1:286-305
CCACAGCCGCCGCCGCAGCAACAGCAACCA286AACCAACAGCAGAAGCAGATCCGACCCTTGAATCAAGCGGAGCTCCAGAT
CM089A09 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR460645.1:73-92
ACCGCGCCGCAGCAACAGCAACAGCAACCA73AACCAACAGCAGAAGCAGATCCGACCCTTGAATCAAGCGGAGCTCCAGAT
Saccharomycopsis malanga strain KCN26 chromosome 3.
CP025323.1:270909-270928
ACGAAATGCAACCGTAAATGGAAAACACCC270909AACCAACAGCAGAAGCAGATACATTTGATAGCTGATGCTCCGAAATGTAC
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:28371094-28371113
CCGCAGCAACAGCAACAGCAACAGCAACCA28371094AACCAACAGCAGAAGCAGATCCGACCCTTGAATCAAGCGGAGCTCCAGAT
Gossypium bickii isolate GPG1lz chromosome 2.
CP106718.1:89028923-89028942
CCGCCGCCGCAGCAACAGCAACAGCAACCA89028923AACCAACAGCAGAAGCAGATCCGACCCTTGAATCAAGCGGAGCTCCAGAT
Gossypium rotundifolium isolate GPK201 chromosome 2.
CP106723.1:114572879-114572898
CCGCCGCCGCAGCAACAGCAACAGCAACCA114572879AACCAACAGCAGAAGCAGATCCGACCCTTGAATCAAGCGGAGCTCCAGAT
Gossypium hirsutum clone NBRI_TRANS-015 microsatellite sequence.
JX963685.1:157-176
CCGCCGCCGCAGCAACAGCAACAGCAACCA157AACCAACAGCAGAAGCAGATCCGAC
Melanostoma mellinum genome assembly, chromosome: 3.
OU612060.1:187232998-187233017
TCTCTGACACACAGGACAGCAGCAAGCGTC187232998AACCAACAGCAGAAGCAGATAAGTGAACTAAATATTTGCAAGACCTTGCA
Sthenelais limicola genome assembly, chromosome: 1.
OW804094.1:86080781-86080800
CCTGTAGTGCAAGCTCTACTGGACTGTAAC86080781AACCAACAGCAGAAGCAGATCCAGCTTTTGTTGGACAAATTCGCATCTAT
Sthenelais limicola genome assembly, chromosome: 7.
OW804100.1:91043048-91043067
CCTGTAGTGCAAGCTCTACTGGACTGTAAC91043048AACCAACAGCAGAAGCAGATCCAGCTTTTGTTGGACAAATTCGCATCTAT
Nematopogon swammerdamellus genome assembly, chromosome: 23.
OX336356.1:10223102-10223121
AGACTCGCATTTGGCGGCTTTTTTTATGAA10223102AACCAACAGCAGAAGCAGATTTTCGGACTGTTGCTGGACTGTCTAGCCTG
Lamellibrachia columna genome assembly, chromosome: 2.
OY759262.1:4755407-4755426
CACTTTCTGTACCATAAAACCATAGAGCCA4755407AACCAACAGCAGAAGCAGATTTAGGAATATGTTTACTTTTAATCACATAA
Dexiosoma caninum genome assembly, chromosome: 4.
OZ004728.1:25304589-25304608
ATCGTGAAATGACAATGGTCCGGTGACATT25304589AACCAACAGCAGAAGCAGATAAAAGCACTCAGTCTGCCTTGGATTGACTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATCTGCTTCTGCTGTTGGTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCTGCTTCTGCTGTTGGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.224 | 0.215 | search_plus_done; http://172.18.8.135:50400/match?q=ATCTGCTTCTGCTGTTGGTT&k=0&no_gap=0&offset=0&limit=50
0.559 | 0.335 | search_minus_done; http://172.18.8.135:50400/match?q=AACCAACAGCAGAAGCAGAT&k=0&no_gap=0&offset=0&limit=41
0.570 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).