GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:39:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig749, mRNA sequence.
JW050993.1:1092-1117
GGGCAGCTATAAAATTCCGGGGAGTGGAAG1092CGGACATAAACTTTAGCTTAGAAGATTATGAATCCGACTTGAAACAGATGACAAAT
Capsicum annuum Takanotsume DNA, chromosome 2, sequence.
AP026697.1:167631944-167631969
GGGCAGCTATAAAATTCCGGGGAGTGGAAG167631944CGGACATAAACTTTAGCTTAGAAGATTATGAATCCGACTTGAAACAGGTAATTGTG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 3.
CP124717.1:87391079-87391104
GGGCAGCTATAAAATTCCGGGGAGTGGAGG87391079CGGACATAAACTTTAGCTTAGAAGATTACGAATCCGACTTGAAACAGGTAACTGTG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 2.
CP124730.1:168335904-168335929
GGGCAGCTATAAAATTCCGGGGAGTGGAAG168335904CGGACATAAACTTTAGCTTAGAAGATTATGAATCCGACTTGAAACAGGTAATTGTG
Capsicum annuum cultivar Maor AP2 transcription factor (AP2) mRNA, complete cds.
KM594389.1:623-648
GGGCAGCTATAAAATTCCGGGGAGTGGAAG623CGGACATAAACTTTAGCTTAGAAGATTATGAATCCGACTTGAAACAGATGACAAAT
Capsicum annuum cultivar PI527325 AP2 transcription factor (AP2) mRNA, complete cds.
KM594390.1:623-648
GGGCAGCTATAAAATTCCGGGGAGTGGAAG623CGGACATAAACTTTAGCTTAGAAGATTATGAATCCGACTTGAAACAGATGACAAAT
Capsicum annuum cultivar PI511887 AP2 transcription factor (AP2) mRNA, complete cds.
KM594391.1:623-648
GGGCAGCTATAAAATTCCGGGGAGTGGAAG623CGGACATAAACTTTAGCTTAGAAGATTATGAATCCGACTTAAAACAGATGACAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCTTCTAAGCTAAAGTTTATGTCCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCTTCTAAGCTAAAGTTTATGTCCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.111 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=ATCTTCTAAGCTAAAGTTTATGTCCG&k=0&no_gap=0&offset=0&limit=50
0.170 | 0.059 | search_minus_done; http://172.18.8.135:50400/match?q=CGGACATAAACTTTAGCTTAGAAGAT&k=0&no_gap=0&offset=0&limit=50
0.175 | 0.005 | cgi_end;

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