GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 04:40:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Barbus barbus genome assembly, chromosome: 15.
OW387182.1:10353142-10353161
TCATTGATCTCATTCTGATAGCCTTGGATC10353142ATCTTCTCCACCCTCTTCCGATCCATCTTGGATTGAACCGCATCTGTGAT
Falco punctatus genome assembly, chromosome: 2.
OY723434.1:118442055-118442074
TCTTTATCTCTTAACAACTTTTCTGGGGCC118442055ATCTTCTCCACCCTCTTCCGCACTTCACCCTTACATGGACCTGCCTTTAT
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:30164465-30164484
ACGGTGTCGATGTTGTGGGTGTGGAGCTTC30164465ATCTTCTCCACCCTCTTCCGGCCCTCCTCGTCGTGGCTCACCGCCCGGAT
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:30233527-30233546
ACGGTGTCGATGTTGTGGGTGTGGAGCTTC30233527ATCTTCTCCACCCTCTTCCGGCCATCCTCGTCGTGGCTCACCGCCCGGAT
Secale cereale genome assembly, chromosome: 5R.
LR738713.1:850466454-850466473
AACTCGATCTTCTCCCTCTCAATTCTGAGC850466454ATCTTCTCCACCCTCTTCCGGTCACACTCCATCATTTCCTTTTGCGCATC
Avena insularis genome assembly, chromosome: 1C.
OU342338.1:94077902-94077921
ATCATCGCTGTCTTCAATATCTGAAGCATC94077902ATCTTCTCCACCCTCTTCCGACCCATCTTCAACGTTCTCATTGTGCTCAT
Avena sativa genome assembly, chromosome: 1C.
OU342385.1:101045818-101045837
ATCATCGCTGTCTTCAATATCTGAAGCATC101045818ATCTTCTCCACCCTCTTCCGACCCATCTTCAACGTTCCCATTGTGCTCGT
Avena sativa genome assembly, chromosome: 8.
OV702286.1:112712466-112712485
ATCATCGCTGTCTTCAATATCTGAAGCATC112712466ATCTTCTCCACCCTCTTCCGACCCATCTTCAACGTTCTCATTGTGCTCGT
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:30262995-30263014
ACGGTGTCGATGTTGTGGGTGTGGAGCTTC30262995ATCTTCTCCACCCTCTTCCGGCCATCCTCGTCGTGGCTCACCGCCCGGAT
Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:31901343-31901362
ACGGTGTCGATGTTGTGGGTGTGGAGCTCC31901343ATCTTCTCCACCCTCTTCCGGCCCCCCTTGTCGTGGCTCACCGCCCGGAT
Pyrus communis genome assembly, chromosome: 9.
OY757076.1:26129161-26129180
ACGGTGTCGATGTTGTGGGTGTGGAGCTCC26129161ATCTTCTCCACCCTCTTCCGGCCCTCCTCGTCGTGGCTCACCGCCCGGAT
Maratus michaelseni genome assembly, chromosome: 9.
OZ007595.1:275130236-275130255
ATCAACTTATCGCAAAACTTTACCCAAATT275130236ATCTTCTCCACCCTCTTCCGCTACATTTTTTTCGACGACGGAGATGTAAT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:1420849-1420868
ATCCGGGCGGTGAGCCACGACGAGGAGGGC1420849CGGAAGAGGGTGGAGAAGATGAAGCTCCACACCCACAACATCGACACCGT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:1543368-1543387
ATCCGGGCGGTGAGCCACGACGAGGATGGC1543368CGGAAGAGGGTGGAGAAGATGAAGCTCCACACCCACAACATCGACACCGT
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:1595521-1595540
ATCCGGGCGGTGAGCCACGACGAGGATGGC1595521CGGAAGAGGGTGGAGAAGATGAAGCTCCACACCCACAACATCGACACCGT
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:1320697-1320716
ATCCGGGCGGTGAGCCACGACGAGGAGGGC1320697CGGAAGAGGGTGGAGAAGATGGAGCTCCACACCCACAACATCGACACCGT
Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:1566544-1566563
ATCCGGGCGGTGAGCCACGACGAGGAGGGC1566544CGGAAGAGGGTGGAGAAGATGAAGCTCCACACCCACAAAATCGACACCGT
Malus domestica genome assembly, chromosome: 12.
OU696688.1:1588359-1588378
ATCCGGGCGGTGAGCCACGACGAGGATGGC1588359CGGAAGAGGGTGGAGAAGATGAAGCTCCACACCCACAACATCGACACCGT
Malus domestica genome assembly, chromosome: 12.
OU744553.1:1535258-1535277
ATCCGGGCGGTGAGCCACGACGAGGAGGGC1535258CGGAAGAGGGTGGAGAAGATGAAGCTCCACACCCACAAAATCGACACCGT
Malus domestica genome assembly, chromosome: 12.
OU744964.1:1432466-1432485
ATCCGGGCGGTGAGCCACGACGAGGATGGC1432466CGGAAGAGGGTGGAGAAGATGAAGCTCCACACCCACAACATCGACACCGT
Malus domestica genome assembly, chromosome: 12.
OU745002.1:1625863-1625882
ATCCGGGCGGTGAGCCACGACGAGGATGGC1625863CGGAAGAGGGTGGAGAAGATGAAGCTCCACACCCACAACATCGACACCGT
Myrrha octodecimguttata genome assembly, chromosome: 2.
OY294057.1:47063819-47063838
CTTAAATGATGCAACAAGCATTCCTTCATT47063819CGGAAGAGGGTGGAGAAGATTGAGGAGACTGATTCAACACTAAGCGAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATCTTCTCCACCCTCTTCCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCTTCTCCACCCTCTTCCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.133 | 0.124 | search_plus_done; http://172.18.8.135:50400/match?q=ATCTTCTCCACCCTCTTCCG&k=0&no_gap=0&offset=0&limit=50
0.174 | 0.041 | search_minus_done; http://172.18.8.135:50400/match?q=CGGAAGAGGGTGGAGAAGAT&k=0&no_gap=0&offset=0&limit=38
0.180 | 0.006 | cgi_end;

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