GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 11:29:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Apteryx australis mantelli genome assembly, scaffold: scaffold174.
LK064744.1:72232-72251
AATGAAGGCAATCACCTGAAAAGCTATAAA72232ATGAAACTGGAGATATTGGCAAAGCAGGGGACATAAAGCTTGACTAGAAA
Somateria mollissima genome assembly, chromosome: 3.
OX598304.1:92628313-92628332
TAAAGTATGTGTAAAACACTCACTGGCATC92628313ATGAAACTGGAGATATTGGCATTTTTTCCACACTAACTTGATTGTATGCA
Somateria mollissima genome assembly, chromosome: 3.
OX598692.1:92738478-92738497
TAAAGTATGTGTAAAACACTCACTGGCATC92738478ATGAAACTGGAGATATTGGCATTTTTTCCACACTAACTTGATTGTATGCA
Papaver somniferum cultivar Roxanne chromosome 3.
CP048215.1:107568341-107568360
GTCTACGAAATGTTAGTAGCAGAATGTCAT107568341GCCAATATCTCCAGTTTCATTTGATGTAACACGACCAAAATAAATTTCGG
Brassica rapa genome, scaffold: A07.
LR031574.1:18510945-18510964
AACGGAGTACAAGCCTATCCTTCCCGTTGC18510945GCCAATATCTCCAGTTTCATGCAAAATCTACTTTGTATACACAATACAAA
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:18802340-18802359
AACGGAGTACAAGCCTATCCTTCCCGTTGC18802340GCCAATATCTCCAGTTTCATGCAAAATCTACTTTGTATACACAATACAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGAAACTGGAGATATTGGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGAAACTGGAGATATTGGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.113 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=ATGAAACTGGAGATATTGGC&k=0&no_gap=0&offset=0&limit=50
0.146 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=GCCAATATCTCCAGTTTCAT&k=0&no_gap=0&offset=0&limit=47
0.148 | 0.002 | cgi_end;

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