GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:23:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Prunus dulcis DNA, pseudomolecule Pd07.
AP019303.1:19199240-19199258
ATAATAGTACTACAAAGAAAAATACTTGAA19199240ATGAAAGGCTAGGCCTCTAAGTCTTAACTCTTCCTCCTCTCCATATCCT
Prunus dulcis DNA, pseudomolecule Pd07.
AP019303.1:19200218-19200236
ATCATAGTACTACAAAGAAAAATACTTGAA19200218ATGAAAGGCTAGGCCTCTATGTCTAACTCTTCCTCCTCTCCATATCCTC
Chamaenerion angustifolium genome assembly, chromosome: 13.
OX328277.1:17571180-17571198
CTTGAGATAACATCGGGCAATGGTGCTTGA17571180ATGAAAGGCTAGGCCTCTAACTTTAGATAGAGAAAGTTTTAGAGAGAAA
Sphenostylis stenocarpa genome assembly, chromosome: 6.
OY731403.1:17641667-17641685
GAAGTGAAGGCTGGAATTAGTTGGAACCTT17641667ATGAAAGGCTAGGCCTCTAGAATCGCCAAGCAATTTTTTCCTTTCTGTT
Gibbula magus genome assembly, chromosome: 8.
OW388296.1:41469633-41469651
AGACTTGCTGTAGACTTGCCTCAGGTCTGG41469633ATGAAAGGCTAGGCCTCTATATTTAACTCTTATCATGCTGAGCATGGAT
Incurvaria masculella genome assembly, chromosome: 23.
OX335663.1:6635286-6635304
TAAGCGAGGATTTGAACCCAGACCTCTGGC6635286ATGAAAGGCTAGGCCTCTAGCCTCTAGACCACGACCTGATCGTATTAGC
Polietes domitor genome assembly, chromosome: 3.
OX377620.1:172067319-172067337
TGTGTGATGTAATTTGCTAAATTGTAAGTG172067319ATGAAAGGCTAGGCCTCTACATTCAATCTAAAACTATTTTATTTATAAT
PU2_plate50_J24 PU2 Prunus persica cDNA similar to hypothetical protein, mRNA sequence.
DY640963.1:431-449
CCGCGAACTGCGACCTCCTCGCCCATGTTT431TAGAGGCCTAGCCTTTCATTTCAAGTATTTTTCTTTGTAGTTTATTTTC
Prunus dulcis DNA, pseudomolecule Pd02.
AP019298.1:20929795-20929813
CCGCGACCTGCGTCCTCCTCGCCCATGTTT20929795TAGAGGCCTAGCCTTTCATTTCAAGTATTTTTCTTTGTAGTTTATTTTC
Berberis vulgaris genome assembly, chromosome: 10.
OY747133.1:72093248-72093266
TCTTGGAAATGGAAGGATATGAAGAAGAGT72093248TAGAGGCCTAGCCTTTCATGTTCATACATTTTACATATTTATCTTGGCA
Platycnemis pennipes genome assembly, chromosome: 11.
OW121857.1:45029912-45029930
AACATCTCCAAATCGCAGAAACCCTATTGC45029912TAGAGGCCTAGCCTTTCATAAACAGAGAAATCCTCGGGAATCTATTTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGAAAGGCTAGGCCTCTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGAAAGGCTAGGCCTCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.352 | 0.343 | search_plus_done; http://172.18.8.135:50400/match?q=ATGAAAGGCTAGGCCTCTA&k=0&no_gap=0&offset=0&limit=50
0.510 | 0.158 | search_minus_done; http://172.18.8.135:50400/match?q=TAGAGGCCTAGCCTTTCAT&k=0&no_gap=0&offset=0&limit=43
0.512 | 0.003 | cgi_end;

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