GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:53:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Cannabis sativa PK02954.1_1.CasaPuKu mRNA sequence.
JP449726.1:203-222
TTTCTTCCACTCAAAGAAGCTGTACAAAGT203ATGAGCCTTTCCACTCTTTGGAGCCAAGTTTTGGCTCCCATTAATGTCAA
Quercus variabilis isolate HB chromosome 4b.
CP129436.1:14280951-14280970
GAGAGTTTAACGCTTACCTTTTGGCCAACC14280951ATGAGCCTTTCCACTCTTTGCAGATGGGAAGTAGGCCCAACCCACCTTTC
Quercus variabilis isolate HB chromosome 4a.
CP129448.1:14863874-14863893
GAGAGTTTAACGCTTACCTTTTGGCCAACC14863874ATGAGCCTTTCCACTCTTTGCAGATGGGAAGTAGGCCCAACCCACCTTTC
Melanotus villosus genome assembly, chromosome: 8.
OY720425.1:32331394-32331413
GAGTCCTTCGCACACGTGAAAAACTGCTCC32331394ATGAGCCTTTCCACTCTTTGGCCCGAGCTTTGCTCATAAACGGATATTAA
Quercus robur genome assembly, chromosome: 4.
OW028768.1:71433163-71433182
GAAAGGTGGGTTGGGCCTACTTCCCATCTT71433163CAAAGAGTGGAAAGGCTCATGGTTGGCCAAAAGGTAAGCGTTAAACTCTC
Quercus cerris genome assembly, chromosome: 2.
OY770007.1:78402388-78402407
GAAAGGTGGGTTGGGCCTACTTCCCATCTG78402388CAAAGAGTGGAAAGGCTCATGGTTGGCCAAAAGGTAAGCGTTAAACTCTC
Lathyrus sativus genome assembly, chromosome: 4.
OZ012738.1:666904265-666904284
TTTCTAGCATTAGAAACAATGGATATTTTA666904265CAAAGAGTGGAAAGGCTCATACATAAAAATATTGTATCTTATAGGACAAT
Nephrotoma appendiculata genome assembly, chromosome: 3.
OX371225.1:316527993-316528012
TTGGAAGGCATGGAATCACGATGAAAGAAT316527993CAAAGAGTGGAAAGGCTCATCATTAATTCTATGTCCAAATACTGGATACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGAGCCTTTCCACTCTTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGAGCCTTTCCACTCTTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.337 | 0.329 | search_plus_done; http://172.18.8.135:50400/match?q=ATGAGCCTTTCCACTCTTTG&k=0&no_gap=0&offset=0&limit=50
0.427 | 0.090 | search_minus_done; http://172.18.8.135:50400/match?q=CAAAGAGTGGAAAGGCTCAT&k=0&no_gap=0&offset=0&limit=46
0.429 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).