GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 17:25:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Coregonus sp. 'balchen' genome assembly, chromosome: 4.
LR778256.1:1027498-1027517
AGGGGTATTGGGGGGGGGGGGGCTTAGTGA1027498ATGAGGAGTTGAATGGGCACCAAGAGAGAGACAGAGTGAGGAGAAACAAG
Dianthus caryophyllus mRNA, clone: CES05O01, 5' end sequence.
FY384318.1:78-97
GAATTAATTACCTTTAATTTGTTGTAGCAG78ATGAGGAGTTGAATGGGCACAAAATTAAGCAGCATGTGAATAATAATAGG
TSA: Dianthus caryophyllus mRNA, contig: CAK09.407.C1.
FX297298.1:77-96
GAATTAATTACCTTTAATTTGTTGTAGCAG77ATGAGGAGTTGAATGGGCACAAAATTAAGCAGCATGTGAATAATAATAGG
TSA: Dianthus caryophyllus mRNA, contig: CAK09.407.C2.
FX297299.1:181-200
CCATATTTCTCTTATCCAATGCCTTTCTAG181ATGAGGAGTTGAATGGGCACAAAATTAAGCAGCATGTGAATAATAATAGG
Apteryx australis mantelli genome assembly, scaffold: scaffold132.
LK065216.1:4355739-4355758
ACACAACGCGATGGCTTATAAAAGACACAC4355739GTGCCCATTCAACTCCTCATCATCATTCAGGCAAAAGGAGGAAGACAGGC
TSA: Dianthus caryophyllus mRNA, contig: CAK09.407.C3.
FX297300.1:313-332
CCTATTATTATTCACATGCTGCTTAATTTT313GTGCCCATTCAACTCCTCATCTAGAAAGGCATTGGATAAGAGAAATGTGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGAGGAGTTGAATGGGCAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGAGGAGTTGAATGGGCAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.200 | 0.192 | search_plus_done; http://172.18.8.135:50400/match?q=ATGAGGAGTTGAATGGGCAC&k=0&no_gap=0&offset=0&limit=50
0.238 | 0.037 | search_minus_done; http://172.18.8.135:50400/match?q=GTGCCCATTCAACTCCTCAT&k=0&no_gap=0&offset=0&limit=46
0.239 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).