GGGenome | Results

2025-04-06 14:37:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

pOP-CNH01617_EST_C_1_pSK_SK CNH (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNH01617 5', mRNA sequence.
EY402423.1:48-68

CGAACATGAAACCCAGCGTTAAGATCATCC48ATGCAAGGTTTTGTTGAAACTAATCCTCTCTCTCTCTCTCTCTCTCTCTCT

Merzomyia westermanni genome assembly, chromosome: 1.
OX465288.1:58320415-58320435

TATCAGAGCAAATTAGTACTTTTCTCGCTC58320415ATGCAAGGTTTTGTTGAAACTTATAGAAAATAAGTACTTATTCCAATTTGC

Plagiodera versicolora genome assembly, chromosome: X.
OY757529.1:12759625-12759645

TTCTATAGTTTTATTCACTATAGCAGTCTG12759625AGTTTCAACAAAACCTTGCATTAGTTTATTATTGAATTTCACAAACTTTGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.165 | 0.156 | search_plus_done; http://172.18.8.135:50400/match?q=ATGCAAGGTTTTGTTGAAACT&k=0&no_gap=0&offset=0&limit=50
0.188 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=AGTTTCAACAAAACCTTGCAT&k=0&no_gap=0&offset=0&limit=48
0.188 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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