GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-10 10:14:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mus musculus genome assembly, chromosome: 17.
OW971559.1:18557121-18557140
ATGGTTATGAATTTTAAGTAAATATTTGAT18557121ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Mus musculus genome assembly, chromosome: 17.
OW971590.1:18337007-18337026
ATGGTTATGAATTTTAAGTAAATATTTGAT18337007ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Mus musculus genome assembly, chromosome: 17.
OW971611.1:18629254-18629273
ATGGTTATGAATTTTAAGTAAATATTTGAT18629254ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Mus musculus domesticus genome assembly, chromosome: 17.
OW971633.1:19343108-19343127
ATGGTTATGAATTTTAAGTAAATATTTGAT19343108ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Mus musculus genome assembly, chromosome: 17.
OW971653.1:18909930-18909949
ATGGTTATGAATTTTAAGTAAATATTTGAT18909930ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Mus musculus molossinus genome assembly, chromosome: 17.
OW971674.1:20161724-20161743
ATGGTTATGAATTTTAAGTAAATATTTGAT20161724ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATC
Mus spretus genome assembly, chromosome: 17.
OW971695.1:19586356-19586375
ATGGTTGTGAATTTTAAGTAAATATTTGGT19586356ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Mus musculus genome assembly, chromosome: 17.
OW971707.1:19050463-19050482
ATGGTTATGAATTTTAAGTAAATATTTGAT19050463ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Mus musculus genome assembly, chromosome: 17.
OW971737.1:18609135-18609154
ATGGTTATGAATTTTAAGTAAATATTTGAT18609135ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Mus musculus genome assembly, chromosome: 17.
OW971758.1:19619828-19619847
ATGGTTATGAATTTTAAGTAAATATTTGAT19619828ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Mus musculus musculus genome assembly, chromosome: 17.
OW971779.1:18144093-18144112
ATGGTTATGAATTTTAAGTAAATATTTGAT18144093ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATC
Mus musculus genome assembly, chromosome: 17.
OW971800.1:18547292-18547311
ATGGTTATGAATTTTAAGTAAATATTTGAT18547292ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Mus musculus genome assembly, chromosome: 17.
OW971821.1:20716206-20716225
ATGGTTATGAATTTTAAGTAAATATTTGAT20716206ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Mus musculus castaneus genome assembly, chromosome: 17.
OW971833.1:19249942-19249961
ATGGTTATGAATTTTAAGTAAATATTTGAT19249942ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGTTGACCCCCATCT
Mus musculus genome assembly, chromosome: 17.
OW971852.1:18575354-18575373
ATGGTTATGAATTTTAAGTAAATATTTGAT18575354ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Mus musculus genome assembly, chromosome: 17.
OX389811.1:24037194-24037213
ATGGTTATGAATTTTAAGTAAATATTTGAT24037194ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Mus musculus genome assembly, chromosome: 17.
OX390160.1:22114125-22114144
ATGGTTATGAATTTTAAGTAAATATTTGAT22114125ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Mus musculus genome assembly, chromosome: 17.
OX439030.1:25154467-25154486
ATGGTTATGAATTTTAAGTAAATATTTGAT25154467ATGCAGGTGGTCTTTGATGGTCTCTGTGAAAGCACTGCTTGACCCCCATA
Bufo bufo genome assembly, chromosome: 5.
LR991671.1:228305213-228305232
GGTTCCTCATGGTAAAAAACAGTGAAGGAG228305213ATGCAGGTGGTCTTTGATGGGGGTAATTGGTACTGAAATGGAAAGCCCTA
Secale cereale genome assembly, chromosome: 7R.
LR738715.1:737603641-737603660
GAAGGAATCCATAATTTGAACCTGGGTGCC737603641ATGCAGGTGGTCTTTGATGGAGGAGGTGCCGGTGGTGCCAATGACTGGAT
Aphrocallistes beatrix genome assembly, chromosome: 5.
OY725492.1:3162980-3162999
TCGTACCCATGATTGGCCACTCCCCCAAAA3162980ATGCAGGTGGTCTTTGATGGGCGAATGTCTCGAAAGCTGACATTGCTTGC
Sepiola atlantica genome assembly, chromosome: 9.
OY744523.1:164353915-164353934
ATAATAAGATCCTTCTTATCCAAAACAAAT164353915ATGCAGGTGGTCTTTGATGGAATTTTATACAAACAACGTGACATAAAATT
Mus musculus BAC clone RP24-118H13 from chromosome 17, complete sequence.
AC154486.2:55068-55087
TATGGGGGTCAAGCAGTGCTTTCACAGAGA55068CCATCAAAGACCACCTGCATATCAAATATTTACTTAAAATTCATAACCAT
Mus musculus BAC clone RP24-80F22 from chromosome 17, complete sequence.
AC166246.1:189813-189832
TATGGGGGTCAAGCAGTGCTTTCACAGAGA189813CCATCAAAGACCACCTGCATATCAAATATTTACTTAAAATTCATAACCAT
JP 2014500723-A/8420: Polycomb-Associated Non-Coding RNAs.
LF200917.1:21734-21753
TATGGGGGTCAAGCAGTGCTTTCACAGAGA21734CCATCAAAGACCACCTGCATATCAAATATTTACTTAAAATTCATAACCAT
JP 2018138019-A/8420: Polycomb-Associated Non-Coding RNAs.
MA436494.1:21734-21753
TATGGGGGTCAAGCAGTGCTTTCACAGAGA21734CCATCAAAGACCACCTGCATATCAAATATTTACTTAAAATTCATAACCAT
Sequence 8420 from patent US 10119144.
MM229261.1:21734-21753
TATGGGGGTCAAGCAGTGCTTTCACAGAGA21734CCATCAAAGACCACCTGCATATCAAATATTTACTTAAAATTCATAACCAT
Glycine max cultivar Williams 82 chromosome 16.
CP126441.1:7721305-7721324
AAGGGCCATATTGAATCCCATTTTTTGCAC7721305CCATCAAAGACCACCTGCATAAAATAATAGCAATTACAATTAGAATCATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGCAGGTGGTCTTTGATGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGCAGGTGGTCTTTGATGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.368 | 0.359 | search_plus_done; http://172.18.8.135:50400/match?q=ATGCAGGTGGTCTTTGATGG&k=0&no_gap=0&offset=0&limit=50
0.628 | 0.261 | search_minus_done; http://172.18.8.135:50400/match?q=CCATCAAAGACCACCTGCAT&k=0&no_gap=0&offset=0&limit=28
0.632 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).