GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 04:53:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig12349, mRNA sequence.
JW062593.1:277-296
ACGTGTCCTGTCAAACAAAACTGACAAAAT277ATGCAGTCACAAGCATCACCACGGATTTCTATCTATTTATTTATTTATTT
Draba incana genome assembly, chromosome: 12.
OY755213.1:35525029-35525048
TTAAGTGAACGTCCTTTATCCTTACGATAA35525029ATGCAGTCACAAGCATCACCACATTGATCAGTCATTTGGTGCAGTAGACC
KS16037A05 KS16 Capsicum annuum cDNA, mRNA sequence.
GD072875.1:385-404
AAATAAATAAATAAATAGATAGAAATCCGT385GGTGATGCTTGTGACTGCATATTTTGTCAGTTTTGTTTGACAGGACACGT
TSA: Hynobius retardatus mRNA, contig: comp10382_c1_seq1.
LE009719.1:252-271
ATGGGCCTTGACTCGTGTGGCCGGTCGTAC252GGTGATGCTTGTGACTGCATTCATTGCTGGATGTCATGGAAGGTCCAAGT
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:255980934-255980953
AAATAAATAAATAAATAGATAGAAATCCGT255980934GGTGATGCTTGTGACTGCATATTTTGTCAGTTCTGTTTGACAGGACACGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 1.
CP124731.1:255929219-255929238
AAATAAATAAATAAATAGATAGAAATCCGT255929219GGTGATGCTTGTGACTGCATATTTTGTCAGTTTTGTTTGACAGGACACGT
Draba incana genome assembly, chromosome: 6.
OY755207.1:1391426-1391445
GGTCTACTGCACCAAATGACTGATCAATGT1391426GGTGATGCTTGTGACTGCATTTATCGTAAGGATAAAGGACGTTCGCTTAA
Draba incana genome assembly, chromosome: 15.
OY755216.1:4393499-4393518
GGTCTCATGCACCATGTAACCGATAAATGC4393499GGTGATGCTTGTGACTGCATTCGTCGGGAGGAGAAAGGCATGTCACTCGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGCAGTCACAAGCATCACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGCAGTCACAAGCATCACC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.123 | 0.115 | search_plus_done; http://172.18.8.135:50400/match?q=ATGCAGTCACAAGCATCACC&k=0&no_gap=0&offset=0&limit=50
0.249 | 0.125 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGATGCTTGTGACTGCAT&k=0&no_gap=0&offset=0&limit=48
0.252 | 0.004 | cgi_end;

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