GGGenome | Results

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2025-04-09 21:05:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Tetrao urogallus genome assembly, chromosome: 6.
OX596300.1:685253-685272

AAATATCAGTGAATGCCACCACAAGCAAGC685253ATGCAGTTGAGGACAAAAAGGCGACTCAGTTTATGTTTGTACACAGCCAC

Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:29178841-29178860

CGGATGCGCAAGAGATGACAGTGTGTTTGT29178841ATGCAGTTGAGGACAAAAAGGAGGGGTGGGGGGGGGGGGGACCAGGAAAT

Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:25663855-25663874

CGGACGCGCAAGAGATGACAGTATGTTTGT25663855ATGCAGTTGAGGACAAAAAGGAGGGGTGGGGGGGGGGGGGACCAGGAAAT

Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:27717125-27717144

CGGATGCGCAAGAGATGACAGTGTGTTTGT27717125ATGCAGTTGAGGACAAAAAGGAGGGGTGGGGGGGGGGGGGGGGGGGGGAC

Malus domestica genome assembly, chromosome: 14.
OU696690.1:28983925-28983944

CGGATGCGCAAGAGATGACAGTGTGTTTGT28983925ATGCAGTTGAGGACAAAAAGGAGGGGTGGGGGGGGGGGGGACCAGGAAAT

Malus domestica genome assembly, chromosome: 14.
OU744966.1:29738183-29738202

CGGATGCGCAAGAGATGACAGTGTGTTTGT29738183ATGCAGTTGAGGACAAAAAGGAGGGGTGGGGGGGGGGGGGGACCAGGAAA

Malus domestica genome assembly, chromosome: 14.
OU745004.1:29617433-29617452

CGGATGCGCAAGAGATGACAGTGTGTTTGT29617433ATGCAGTTGAGGACAAAAAGGAGGGGTGGGGGGGGGGGGGGACCAGGAAA

Pipistrellus pygmaeus genome assembly, chromosome: 2.
OX465303.1:38430174-38430193

TAGCTTTTTGCTGGCCCATAGCGCCCACCT38430174CTTTTTGTCCTCAACTGCATGATGTGAGCGAAGGGTGTGTATCTTCTCAG

Gallus gallus breed Huxu chromosome 7.
CP100561.1:25033563-25033582

TTACTTAGATAATCCAATCTTTAATTCTGC25033563CTTTTTGTCCTCAACTGCATGTGTTATTCAGAACTAAACTGAGATCTTTC

Geotrypetes seraphini genome assembly, chromosome: 1.
LR699146.1:319025962-319025981

CTTTCCTAATAATTGCTAACATCCTGTTTG319025962CTTTTTGTCCTCAACTGCATATTGGACAGAAGATTTCAGCAAATTTTCTA

Rana temporaria genome assembly, chromosome: 3.
LR991682.1:443194758-443194777

CTTTTTCCCTTTTTTAGAAGTAGTCATATT443194758CTTTTTGTCCTCAACTGCATGAGAGCTGGGAGGGGGAGAAACAGCAGTAC

EG-F01_004_D11 Oil palm female inflorescence Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN600805.1:180-199

CTCTCTCTCTCTTCCTTCCTCTTCCTTTGG180CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG

OPSC01654 Elaeis guineensis Suspension cell cultures Elaeis guineensis cDNA clone 865_2-T3.seq, mRNA sequence.
EL689876.1:181-200

CTCTCTCTCTCTTCCTTCCTCTTCCTTTGG181CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG

OPR04556 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_A4246A.seq, mRNA sequence.
EL694493.1:198-217

CTCTCTTTCTCTTCCTTCCTCTTCCTTTGG198CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG

OPR04557 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_A4246B.seq, mRNA sequence.
EL694494.1:195-214

CTCTCTTTCTCTTCCTTCCTCTTCCTTTGG195CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG

pOP-CNI01615_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNI01615 5', mRNA sequence.
EY403513.1:27-46

CTCTCTCTTCCTTCCTCTTCCTTTGG27CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG

pOP-CNIP00173_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNIP00173 5', mRNA sequence.
EY404145.1:27-46

CTCTCTCTTCCTTCCTCTTCCTTTGG27CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG

pOP-EO02677_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO02677 5', mRNA sequence.
EY409183.1:180-199

CTCTCTCTCTCTCTCTCCCTCTTCCTTTGG180CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG

pOP-EO02206_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO02206 5', mRNA sequence.
EY412853.1:179-198

CTCTCTCTCTCTCTCTCCCTCTTCCTTTGG179CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG

Elaeis guineensis EST, clone (6lib)_isotig03067.
LM615269.1:1261-1280

CTCTCTTTCTCTTCCTTCCTCTTCCTTTGG1261CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG

TSA: Elaeis guineensis isotig03536.Elguifruit mRNA sequence.
JO090790.1:81-100

CTCTCTCTCTCTCTCTCCCTCTTCCTTTGG81CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG

CH261-17A2_RM1.1 CH261 Gallus gallus genomic clone CH261-17A2, genomic survey sequence.
CC250772.1:378-397

TTACTTAGATAATCCAATCTTTAATTCTGC378CTTTTTGTCCTCAACTGCATGTGTTATTCAGAACTAAACAGATCTTTCTG

Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:2668888-2668907

ATTTCCTGGTCCCCCCCCCCCCCACCCCTC2668888CTTTTTGTCCTCAACTGCATACAAACACACTGTCATCTCTTGCGCATCCG

Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:2701535-2701554

TTTCCTGGTCCCCCCCCCCCCCCACCCCTC2701535CTTTTTGTCCTCAACTGCATACAAACACACTGTCATCTCTTGCGCATCCG

Crataegus laevigata genome assembly, chromosome: 16.
OY756953.1:2717508-2717527

CCTTGCATTTCCTGGTCACCCCCACCCCTC2717508CTTTTTGTCCTCAACTGCATACAAACATACTGTCATCTATTGCGCATCCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.008 | 0.008 | search_start;
0.112 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=ATGCAGTTGAGGACAAAAAG&k=0&no_gap=0&offset=0&limit=50
0.639 | 0.528 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTTTGTCCTCAACTGCAT&k=0&no_gap=0&offset=0&limit=43
0.651 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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