GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:47:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pipistrellus pipistrellus genome assembly, chromosome: 1.
LR862356.1:115613693-115613712
TGTGCCCGATTGCCAGTGGGCATGGGATAG115613693ATGCCCTCCCTCCTCCATGAACAAAATCCTGAATCTAGTTCCCTTGGGCA
Eptesicus nilssonii genome assembly, chromosome: 4.
OX621283.1:13009754-13009773
TGTGCCCGATTGCCAGTGGGCATGGGATAG13009754ATGCCCTCCCTCCTCCATGAACAAAATCCTGAATCTAGTCCCCTTGGGCA
Scyliorhinus canicula genome assembly, chromosome: 10.
LR744039.1:3977392-3977411
TCACGTTATTACGGGCCTTGCAGTTTATGG3977392ATGCCCTCCCTCCTCCATGACGGCGTGGTGTCCCCTTGTGGGGGTCGGGT
Hordeum bulbosum genome assembly, chromosome: 6H_2.
OY737878.1:375084991-375085010
TTCCCTCTCTTTCCTCAAACCCTCCCGTGC375084991ATGCCCTCCCTCCTCCATGACGCCTGCAAACCCTCGCGGCCTGGTCATCA
Onychomys leucogaster genome assembly, chromosome: 4.
OX460374.1:10778341-10778360
TATTCAGAACTCCTCAGGATCAGGAAGGCT10778341TCATGGAGGAGGGAGGGCATGCTGTCTGCCCACCTACTCCCATGGAGGTG
Onychomys leucogaster genome assembly, chromosome: 4.
OX460421.1:10575871-10575890
TATTCAGAACTCCTCAGGATCAGGAAGGCT10575871TCATGGAGGAGGGAGGGCATGCTGTCTGCCCACCTACTCCCATGGAGGTG
Felis catus Senzu DNA, chromosome: B4, American Shorthair breed.
AP023158.1:28659412-28659431
GCTCACGGGGAACCAGGTTCGTGATTTTAT28659412TCATGGAGGAGGGAGGGCATCTCTCCCACGCCCTCCCGTATCGACACAGA
Pipistrellus pygmaeus genome assembly, chromosome: 1.
OX465302.1:90447712-90447731
TGCCCAAGGGAACTAGATTCAGGATTTTGT90447712TCATGGAGGAGGGAGGGCATCTCTCCCATGCCCACTGGCAATCGGGCACA
Myotis daubentonii genome assembly, chromosome: 1.
OY725359.1:98736029-98736048
TGCCCAAGGGGACTGGATTCAGGATTTTGT98736029TCATGGAGGAGGGAGGGCATCTATCCCATGCCCACCGGCAATTGGGCACA
Plecotus auritus genome assembly, chromosome: 1.
OY734022.1:105460020-105460039
TGCCCAAGGGGACTAGATTCAGGATTTTGT105460020TCATGGAGGAGGGAGGGCATCTATCTCATGCCCACTGGCAATCAGGTACA
Pipistrellus nathusii genome assembly, chromosome: 1.
OY882858.1:90414346-90414365
TGCCCAAGGGAACTAGATTCAGGATTTTGT90414346TCATGGAGGAGGGAGGGCATCTATCTCATGCCCACTGGCAGTCGGGCACA
Pipistrellus nathusii genome assembly, chromosome: 1.
OY883178.1:88538168-88538187
TGCCCAAGGGAACTAGATTCAGGATTTTGT88538168TCATGGAGGAGGGAGGGCATCTATCTCATGCCCACTGGCAGTCGGGCACA
Sambucus nigra genome assembly, chromosome: 3.
OX422209.1:71212432-71212451
ATTGCATGATTCCAGGGTGGATGTTTAATT71212432TCATGGAGGAGGGAGGGCATTTATACTATGTTCATCTTCTATGAGTCTAT
Microdon myrmicae genome assembly, chromosome: 4.
OZ007499.1:8341556-8341575
GGCATGTTGCTACGAAGGCCATATATATTG8341556TCATGGAGGAGGGAGGGCATTTGATGCCAGTCATTTCAAAAGTTCACGGT
Microdon myrmicae genome assembly, chromosome: 4.
OZ007499.1:8354809-8354828
GGCATGTTGCTACGAAGGCCATATATATTG8354809TCATGGAGGAGGGAGGGCATTTGATGCCAGTCATTTCAAAAGTTCACGGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGCCCTCCCTCCTCCATGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGCCCTCCCTCCTCCATGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=ATGCCCTCCCTCCTCCATGA&k=0&no_gap=0&offset=0&limit=50
0.113 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=TCATGGAGGAGGGAGGGCAT&k=0&no_gap=0&offset=0&limit=46
0.120 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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