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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 12:06:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sparus aurata genome assembly, chromosome: 5.
LR537125.1:6915065-6915083
TTCAGAAAAATGGCTCGCAGCCATTTCCAC6915065ATGCCTCTCATCTGTAAACAAGAGTCTTTCCTAACAAGAAGTCGGGCTG
Acanthopagrus latus isolate v.2019 genome assembly, chromosome: 5.
LR884464.1:4404167-4404185
TTCAGAAAAATGGCTCGCAGCCATTTCCAC4404167ATGCCTCTCATCTGTAAACAAGACGTTTTCCTAACAAGAAGTCAGGCTG
Cyclopterus lumpus genome assembly, chromosome: 2.
OY735149.1:10742518-10742536
TTGGGGGAAATGGCTCGCAGCCATTTCCGC10742518ATGCCTCTCATCTGTAAACAAGTGTCCTTTCCTAACAAGTTACCAAGCT
Comarum palustre genome assembly, chromosome: 2.
OX637573.1:258744-258762
GAAAGTAAGGAATCTCTAATTCGAGTAGAA258744ATGCCTCTCATCTGTAAACTCCTCAATCAAGCTTGTGCCAAGAGCTCAA
Haemonchus contortus strain NZ_Hco_NP chromosome 3.
CP035802.1:66277244-66277262
GGCCAAAGCCGCTTGCCCTTGATCTGTCCG66277244ATGCCTCTCATCTGTAAACGGGGTTCTTCTTCAGGCAGAATATTCTGGA
Argiope bruennichi genome assembly, chromosome: 2.
OX387440.1:141830978-141830996
AAATAATTTTTGAAAGTTCATAATTACATT141830978ATGCCTCTCATCTGTAAACTAAAAATACAAAAGGAAAACCCACTTTATC
Psittacula echo genome assembly, chromosome: 7.
OY725427.1:30194102-30194120
CCTAACCATAATTGATTTTCTTCTGCAGTA30194102GTTTACAGATGAGAGGCATGGTCTCCCCCTCTCTTCCCACCTCCTTTCC
Pinus pinaster xylem EST, clone PP020E04.
BX249143.1:168-186
TGAACATGAACATGAACATGAACAGTGGCG168GTTTACAGATGAGAGGCATGCTCGGCCGGAATGCTGGAGGGAGAACGGG
Pinus pinaster xylem EST, clone PP031B04.
BX249992.1:417-435
TGAACATGAACATGAACATGAACAGTGGCG417GTTTACAGATGAGAGGCATGCTCGGCCGGAATGCTGGAGGGAGAACGGG
EST841107 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIAL691 5' end, mRNA sequence.
CO410722.1:74-92
TGAACATGAACATGAACATGAACAGTGGCG74GTTTACAGATGAGAGGCATGCTCGGCCGGAATGCTGGAGGGAGAACGGG
EST844865 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIAMO92 5' end, mRNA sequence.
CO414480.1:74-92
TGAACATGAACATGAACATGAACAGTGGCG74GTTTACAGATGAGAGGCATGCTCGGCCGGAATGCTGGAGGGAGAACGGG
EST942593 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPIBL71 5' end, mRNA sequence.
DN446794.1:74-92
TGAACATGAACATGAACATGAACAGTGGCG74GTTTACAGATGAGAGGCATGCTCGGCCGGAATGCTGGAGGGAGAACGGG
EST960996 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPIJM30 5' end, mRNA sequence.
DN465197.1:625-643
TGAACATGAACATGAACATGAACAGTGGCG625GTTTACAGATGAGAGGCATGCTCGGCCGGAATGCTGGAGGGAGAACGGG
EST1157501 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIMA146 5' end, mRNA sequence.
DT625577.1:39-57
TGAACATGAACATGAACATGAACAGTGGCG39GTTTACAGATGAGAGGCATGCTCGGCCGGAATGCTGGAGGGAGAACGGG
Comarum palustre genome assembly, chromosome: 16.
OX637587.1:19911990-19912008
TTGAGCTATTGGCACAAGCTTGATTGAGGA19911990GTTTACAGATGAGAGGCATTTCTACTTGAATTAGAAATGGATAGAAATC
Noctua pronuba genome assembly, chromosome: W.
LR999892.1:11213734-11213752
TATGCAAAGGAATAAAGTAAATATTTCGTT11213734GTTTACAGATGAGAGGCATGTAAAAAGTCATGTCATTTGGTACCATTGA
Ypsolopha scabrella genome assembly, chromosome: Z.
OU342960.1:14774021-14774039
GGTAGAACCACCAATATAGATGCAGACTTT14774021GTTTACAGATGAGAGGCATTTGGTTTATATGTACATATTATAACATGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGCCTCTCATCTGTAAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGCCTCTCATCTGTAAAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.127 | 0.118 | search_plus_done; http://172.18.8.135:50400/match?q=ATGCCTCTCATCTGTAAAC&k=0&no_gap=0&offset=0&limit=50
0.463 | 0.336 | search_minus_done; http://172.18.8.135:50400/match?q=GTTTACAGATGAGAGGCAT&k=0&no_gap=0&offset=0&limit=44
0.470 | 0.007 | cgi_end;

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