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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:38:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Lens culinaris contig08416.Lecu mRNA sequence.
JI854674.1:66-83
TCAACTCTGATTCTGCCATAGTTTCATAAT66ATGCCTTAAGAGTACCATAATGGGGGCGCAGAAACTTCAGTGGCTTGG
TSA: Capsicum annuum MGMT_Contig11675, mRNA sequence.
JW061919.1:973-990
ATTACAATCTCTACTTTGCAATTTATTTTC973ATGCCTTAAGAGTACCATATCTGTTAAATGGGTGTATAATGTGGATTA
Rattus norvegicus clone CH230-74P18, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC134082.2:47557-47574
AGAGGCTTCCAGTCATAAGTCTTTCCAGCA47557ATGCCTTAAGAGTACCATTAAACTCACGGTATTCATTTCTCCTCAGAT
Capsicum annuum Takanotsume DNA, chromosome 7, sequence.
AP026702.1:52669343-52669360
TCTACTTTGTTTTTTTTTCAATTTATTTTC52669343ATGCCTTAAGAGTACCATATCTGTTAAATGGGTGTATAATGTGGATTA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:53464742-53464759
CTACTTTGTTTTTTTTTTCAATTTATTTTC53464742ATGCCTTAAGAGTACCATATCTGTTAAATGGGTGTATAATGTGGATTA
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:44720835-44720852
TCAACTCCGATTCCGCCATAGTTTCGTAAT44720835ATGCCTTAAGAGTACCATAATGTGGGCGAAGAAACTTCAGTGGCTTAG
Fagus sylvatica genome assembly, chromosome: 2.
OU015762.1:42333915-42333932
TGGTACCTTATTGAACAGTTCGAAACTGTT42333915ATGCCTTAAGAGTACCATTTAATTGGGTCAGAACCATCAACAGTCCCA
Vicia faba genome assembly, chromosome: 6.
OX451741.1:627109382-627109399
TCAACTCGGATTCCGCCATAGTTTCATAAT627109382ATGCCTTAAGAGTACCATAATGGGGGCGTAAAAACTTCAGTGGCTTGG
Climacium dendroides genome assembly, chromosome: 7.
OX467088.1:21342062-21342079
TTCTATCCAATAATGAAGAAATATTAGAAG21342062ATGCCTTAAGAGTACCATTGATAATTTAATAATTTGTATGAGGCCATT
Trifolium subterraneum genome assembly, chromosome: 1.
OX637461.1:36067764-36067781
TCAACTCCGATTCCGCCATAGTTTCATAAT36067764ATGCCTTAAGAGTACCATAATGTGGGCGAAGAAACTTCAGTGGCTTGG
Trifolium fragiferum genome assembly, chromosome: 2.
OX940790.1:41813214-41813231
TCAACTCCGATTCCGCCATAGTTTCATAAT41813214ATGCCTTAAGAGTACCATAATGTGGGCGAAGAAATTTCAGTGGCTTGG
Quercus cerris genome assembly, chromosome: 4.
OY770009.1:17514672-17514689
TCCCTCTTCCTACCTTATAAGGGATGAGCC17514672ATGCCTTAAGAGTACCATTAGTCCATGGCTCATCCCTTATAAGATAGA
Lathyrus sativus genome assembly, chromosome: 7.
OZ012741.1:533718576-533718593
TCAACTCTGATTCCGCCATAGTTTCATAAT533718576ATGCCTTAAGAGTACCATAATGAGGGCGCAGAAACTTCAGTGGCTTGG
Aelia acuminata genome assembly, chromosome: 3.
OU426981.1:26754824-26754841
GCTTGATAAATTTTTGTTCTTTCATCTTCT26754824ATGCCTTAAGAGTACCATAAGCTTTGTCTCTTAATGGAACTGAATTTC
Athripsodes cinereus genome assembly, chromosome: 14.
OX388318.1:389712-389729
GCAGACCAATAAAGCCTCAGTTGTAGCCGG389712ATGCCTTAAGAGTACCATATGGAGAAATAAACACATGCTAACTGATAG
Athripsodes cinereus genome assembly, chromosome: 15.
OX388319.1:4502443-4502460
GCAGACCAATAAAGCCTCGGTTGTAGCCGG4502443ATGCCTTAAGAGTACCATATGGAGAAATAAACACATGCTAACTGATAG
Athripsodes cinereus genome assembly, chromosome: 19.
OX388323.1:19662424-19662441
ACATACTTATAAAGCCTCAGTTGCAGCCGG19662424ATGCCTTAAGAGTACCATATGGAGAAATAAACACATGCTAATTGATAG
Athripsodes cinereus genome assembly, chromosome: Z.
OX388329.1:19697898-19697915
GCAGACCAATAAAGCCTCAGTTGTAGCCGG19697898ATGCCTTAAGAGTACCATATGGAGAAATAAACACATGCTAACTGATAG
Aleiodes alternator genome assembly, chromosome: 8.
OY998104.1:6654329-6654346
TGCACAAATCATACGCGTCTAATGATACAC6654329ATGCCTTAAGAGTACCATTCCATACGTAATTGAGGCAATCGTCCATGT
Pelobates cultripes genome assembly, chromosome: 13.
OW240924.1:47826104-47826121
TTACAAGAAAACTTACAGGAACAATATATA47826104ATGGTACTCTTAAGGCATGTCCCTTTATATCTTTTACTTTTCACTTAC
Lotus japonicus cDNA, clone: LjFL1-079-DC02, 5' end, protoplasts prepared from suspension-cultured cells.
BW620050.1:429-446
CGAAGCCGTTGAAGTTTCTGCGACCCCATT429ATGGTACTCTTAAGGCATATTATGAAATTATGCCGAAATCTGATTT
Glycyrrhiza uralensis cDNA, clone: kanzou032CH05.f1, 5'-end sequence.
FS277638.1:271-288
CTAAGCCATTGAAGTTTCTTCGCCCCTATT271ATGGTACTCTTAAGGCATATTATGAAACTATGGCGGAATCAGATTTGA
Trifolium repens mRNA, clone: WCT66, unspecified EST.
FY469850.1:40-57
CCAAGCCACTGAAGTTTCTTCGCCCACATT40ATGGTACTCTTAAGGCATATTATGAAACTATGACGGAATCGGAGTTGA
TSA: Capsicum annuum MGMT_Contig7698, mRNA sequence.
JW057942.1:383-400
TAATCCACATTATACACCCATTTAACAGAT383ATGGTACTCTTAAGGCATGAAAATAAATTGCAAAGTAGAGATTGTAAT
Lotus japonicus cDNA, clone: LjFL1-079-DC02, HTC.
AK337769.1:438-455
CGAAGCCGTTGAAGTTTCTGCGACCCCATT438ATGGTACTCTTAAGGCATATTATGAAATTATGCCGAAATCTGATTTGA
Rattus norvegicus clone CH230-164J5, WORKING DRAFT SEQUENCE.
AC097300.5:76813-76830
ATCTGAGGAGAAATGAATACCGTGAGTTTA76813ATGGTACTCTTAAGGCATTGCTGGAAAGACTTATGACTGGAAGCCTCT
Rattus norvegicus clone CH230-244A18, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC113791.5:129958-129975
ATCTGAGGAGAAATGAATACCGTGAGTTTA129958ATGGTACTCTTAAGGCATTGCTGGAAAGACTTATGACTGGAAGCCTCT
Lotus japonicus B-129 DNA, chromosome 3, complete sequence.
AP022631.1:86460480-86460497
CGAAGCCGTTGAAGTTTCTGCGACCCCATT86460480ATGGTACTCTTAAGGCATATTATGAAATTATGCCGAAATCTGATTTGA
Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:47906502-47906519
CCAAGCCACTGAAGTTTCTTCGCCCACATT47906502ATGGTACTCTTAAGGCATATTACGAAACTATGGCGGAATCGGAGTTGA
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:18113470-18113487
CCAAGCCACTGAAGTTTCTTCGCCCACATT18113470ATGGTACTCTTAAGGCATATTACGAAACTATGGCGGAATCGGAGTTGA
Trifolium dubium genome assembly, chromosome: 10.
OX638071.1:18038369-18038386
CCAAGCCATTGAAGTTTCTTCGTCCCCATT18038369ATGGTACTCTTAAGGCATATTATGAAACTATGGCGGAATCAGAGTTGA
Trifolium dubium genome assembly, chromosome: 14.
OX638075.1:15858864-15858881
CCAAGCCATTGAAGTTTCTTCGTCCCCATT15858864ATGGTACTCTTAAGGCATATTATGAAACTATGGCGGAATCGGAGTTGA
Cruciata laevipes genome assembly, chromosome: 8.
OY787639.1:10832930-10832947
AAGAGATTCTTCGATTCGTTTCCACAAGAT10832930ATGGTACTCTTAAGGCATGTTTGCCGGAGTTATTCTAAATCAGTTCAG
Erodium maritimum genome assembly, chromosome: 1.
OY997588.1:56465966-56465983
ACACCTAACAGTTTGTGTGACCGCATATCC56465966ATGGTACTCTTAAGGCATCTAGCATCTCATAGTCATTTTGTACCTGAT
Erodium maritimum genome assembly, chromosome: 1.
OY997588.1:56466539-56466556
GCGCCTAACAGTTTGTGTGACCGCATATCC56466539ATGGTACTCTTAAGGCATCTAGCATCTCATAGTCATTTTGTACCTGAT
Erodium maritimum genome assembly, chromosome: 1.
OY997588.1:56467112-56467129
GCGCCTAACAGTTTGTGTGACCGCATATCC56467112ATGGTACTCTTAAGGCATCTAGCATCTCATAGTCATTTTGTACCTGAT
Lathyrus aphaca genome assembly, chromosome: 3.
OZ014521.1:160669502-160669519
CCAAGCCACTGAAGTTTCTGCGCCCTCATT160669502ATGGTACTCTTAAGGCATATTATGAAACTATGGCGGAATCGGAGTTGA
Pararge aegeria genome assembly, chromosome: 15.
LR990906.1:1437087-1437104
TAACTTAATTATAACCTAAGTACTAAAATG1437087ATGGTACTCTTAAGGCATCTAAAAGATTTCGCCTTTTGGCTGACTGGC
Eristalis pertinax genome assembly, chromosome: 2.
OU026146.1:63380361-63380378
CTATTCTCTGATAAAGAGCCATGGACCCAG63380361ATGGTACTCTTAAGGCATCCCTACAAAAAAGAGGACCTGACGATCATC
Athripsodes cinereus genome assembly, chromosome: 6.
OX388310.1:29662835-29662852
CTATCAGTTAGCATGTGTTAATTTCTCCAT29662835ATGGTACTCTTAAGGCATCCGGCTACAACTGAGGCTTTATTGGTCTGC
Athripsodes cinereus genome assembly, chromosome: 13.
OX388317.1:2122676-2122693
CTATCAGTTAGCATGTGTTTATTTCTCCAT2122676ATGGTACTCTTAAGGCATCCGGCTACAACTGAGGCTTTATTGGTCTGC
Athripsodes cinereus genome assembly, chromosome: 20.
OX388324.1:18353607-18353624
CTATCAGTTAGCATGTGTTTATTTCTCCAT18353607ATGGTACTCTTAAGGCATCCGGCTACAACTGAGGCTTTATTGGTCTGC
Athripsodes cinereus genome assembly, chromosome: 23.
OX388327.1:8640060-8640077
CTATCAGTTAGCATGTGTTTATTTCTCCAT8640060ATGGTACTCTTAAGGCATCCGGCTACAACTGAGGCTTTATTGGTCTGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGCCTTAAGAGTACCAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGCCTTAAGAGTACCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.383 | 0.375 | search_plus_done; http://172.18.8.135:50400/match?q=ATGCCTTAAGAGTACCAT&k=0&no_gap=0&offset=0&limit=50
0.707 | 0.324 | search_minus_done; http://172.18.8.135:50400/match?q=ATGGTACTCTTAAGGCAT&k=0&no_gap=0&offset=0&limit=31
0.723 | 0.016 | cgi_end;

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