GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 20:41:18, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7981.
FX691923.1:3289-3308
GTTTTCTTGAAAAGCTTTCCAGCAAGCTCA3289ATGCGTTCGTCTAAACTGGGTGGAGAAGACGAATCAACTCCCATGTACTT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_53890.
FX748790.1:181-200
GTTTTCTTGAAAAGCTTTCCAGCAAGCTCA181ATGCGTTCGTCTAAACTGGGTGGAGAAGACGAATCAACTCCCATGTACTT
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:61719404-61719423
GTTTTCTTGAAAAGCTTTCCAGCAAGGTCA61719404ATGCGTTCGTCTAAACTGGGTGGAGTAGACGAATCAACGCCCATGTACTT
Draba incana genome assembly, chromosome: 2.
OY755203.1:26525-26544
GTTTTCTTGAAGAGCTTTCCAGCAAGCTCA26525ATGCGTTCGTCTAAACTGGGTGGCGTAGAAGAATCAACGCCCATATACTT
Draba verna genome assembly, chromosome: 3.
OZ174220.1:26996918-26996937
GTCTTCTTAAAGAGTTTTCCAACAAGCTCA26996918ATGCGTTCGTCTAAACTGGGAGACGTAAAGCGATCAGAAGAATCGGAAAA
Draba verna genome assembly, chromosome: 10.
OZ174227.1:39058-39077
GTCTTCTTGAAGAGCTTTCCAACAAGCTCA39058ATGCGTTCGTCTAAACTGGGAGGCGTAGAGCGATCAGAAGAATCAACGCC
Draba verna genome assembly, chromosome: 11.
OZ174228.1:26365-26384
GTCTTCTTGAAGAGCTTCCCAACAAGCTCA26365ATGCGTTCGTCTAAACTGGGAGGGGTAGAGCGATCAGAAGAATCAACGCC
Draba verna genome assembly, chromosome: 21.
OZ174238.1:31832227-31832246
GTCTTCTTAAAGAGCTTTCTAACAAGCTCA31832227ATGCGTTCGTCTAAACTGGGAGGCATAGAGCGACCAGAAGAATCAACGCC
Brassica napus cultivar Xiang5A chromosome 19.
CP151914.1:6831804-6831823
AAGTACATGGGCGTTGATTCGTCTACTCCA6831804CCCAGTTTAGACGAACGCATTGACCTTGCTGGAAAGCTTTTCAAGAAAAC
Brassica napus genome assembly, chromosome: C09.
HG994373.1:7404015-7404034
AAGTACATGGGCGTTGATTCGTCTACTCCA7404015CCCAGTTTAGACGAACGCATTGACCTTGCTGGAAAGCTTTTCAAGAAAAC
Brassica rapa genome, scaffold: A09.
LR031568.1:5741456-5741475
AAGTACATGGGAGTTGATTCGTCTTCTCCA5741456CCCAGTTTAGACGAACGCATTGAGCTTGCTGGAAAGCTTTTCAAGAAAAC
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:7443185-7443204
AAGTACATGGGCGTTGATTCGTCTACTCCA7443185CCCAGTTTAGACGAACGCATTGACCTTGCTGGAAAGCTTTTCAAGAAAAC
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:5943818-5943837
AAGTACATGGGAGTTGATTCGTCTTCTCCA5943818CCCAGTTTAGACGAACGCATTGAGCTTGCTGGAAAGCTTTTCAAGAAAAC
Draba incana genome assembly, chromosome: 4.
OY755205.1:50281678-50281697
AAGTATATGGGCGTTGATTCTTCTACGCCA50281678CCCAGTTTAGACGAACGCATTGAGCTTGCTGGAAAGCTCTTCAAGAAAAC
Adonis annua genome assembly, chromosome: 14.
OZ123189.1:133468452-133468471
CTAAGTATAAGTCACATATTCTTGTACAGA133468452CCCAGTTTAGACGAACGCATGCAGTTTTCCAAACCTGATATACCCATAAA
Draba verna genome assembly, chromosome: 4.
OZ174221.1:20349291-20349310
TTTTCCGATTCTTCTGGTCGGTTTACGTCT20349291CCCAGTTTAGACGAACGCATTGAGCTTGTTGGAAAACTCTGTAAGAAGAC
Draba verna genome assembly, chromosome: 16.
OZ174233.1:34131085-34131104
GGCGTTGATTCTTCTGATCGCTCTACGCCT34131085CCCAGTTTAGACGAACGCATTGAGCTTGTTGGCAAGCTCTTCAAGAAGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGCGTTCGTCTAAACTGGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGCGTTCGTCTAAACTGGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.242 | 0.232 | search_plus_done; http://172.18.8.135:50800/match?q=ATGCGTTCGTCTAAACTGGG&k=0&no_gap=0&offset=0&limit=50
0.374 | 0.133 | search_minus_done; http://172.18.8.135:50800/match?q=CCCAGTTTAGACGAACGCAT&k=0&no_gap=0&offset=0&limit=42
0.380 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).