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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:49:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Eucalyptus camaldulensis mRNA, clone: Root_003_000038G05, 5'-EST.
FY816326.1:212-236
AGATGCCAAGGGCAAATTGAGTTCATGATG212ATGCTGCCGCTACAAAAAGGAAGTCTTCCAATCCCTCCTTCAGAATATCTTGAAG
EMBRA1320 Eucalyptus plant tissues, from EST sequencing Eucalyptus grandis STS cDNA, sequence tagged site.
GF110136.1:253-277
AGATGCCAAGGGCAAATTGAGTTCATGATG253ATGCTGCCGCTACAAAAAGGAAGTCTTCCAATCCCTCCTTCAGAATATCTTGAAG
Sequence 1651 from patent US 9551006.
KH514221.1:2442-2466
CTTCAAGATATTCTGAGGGAGGGATTGGAA2442GACTTCCTTTTTGTAGCGGCAGCATCATCATGAACTCAATTTGCCCTTGGCATCT
Sequence 1651 from patent US 10457952.
MO457397.1:2442-2466
CTTCAAGATATTCTGAGGGAGGGATTGGAA2442GACTTCCTTTTTGTAGCGGCAGCATCATCATGAACTCAATTTGCCCTTGGCATCT
QSB350 nine-year-old eucalypt xylem library Eucalyptus grandis cDNA, mRNA sequence.
EW688556.1:550-574
CTTCAAGATATTCTGAGGGAGGGATTGGAA550GACTTCCTTTTTGTAGCGGCAGCATCATGAACTGGATTTGCCCTTGGCACCTATT
Eucalyptus camaldulensis mRNA, clone: Root_003_000038G05, 3'-EST.
FY816325.1:332-356
CTTCAAGATATTCTGAAGGAGGGATTGGAA332GACTTCCTTTTTGTAGCGGCAGCATCATCATGAACTCAATTTGCCCTTGGCATCT
GR-TS-001-AF-038-F08.R Treated seedlings (EUGR-TS) Eucalyptus grandis cDNA clone GR-TS-001-AF-038-F08.R 5', mRNA sequence.
HS061169.1:350-374
CTTCAAGATATTCTGAAGGAGGGAGTGGAA350GACTTCCTTTTTGTAGCGGCAGCATCATCATGAACTCAATTTGCCCTTGGCATCT
PE-XY-001_RS-008_D07 Xylem vascular tissue, differentiating (EUPE-XY) Eucalyptus pellita cDNA clone PE-XY-001_RS-008_D07 5', mRNA sequence.
JK677253.1:271-295
CTTCAAGATATTCTGAAGGAGGGATAGGAA271GACTTCCTTTTTGTAGCGGCAGCATCATCATAAACTCAATTTGCCCTTGGCATCT
UR-XY-001_BA-039_B02 Xylem vascular tissue, differentiating (EUUR-XY) Eucalyptus urophylla cDNA clone UR-XY-001_BA-039_B02 5', mRNA sequence.
JK683154.1:340-364
CTTCAAGATATTCTGAAGGAGGGATTGGAA340GACTTCCTTTTTGTAGCGGCAGCATCATCATAAACTCAATTTGCCCTTGGCATCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGCTGCCGCTACAAAAAGGAAGTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGCTGCCGCTACAAAAAGGAAGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.319 | 0.310 | search_plus_done; http://172.18.8.135:50400/match?q=ATGCTGCCGCTACAAAAAGGAAGTC&k=0&no_gap=0&offset=0&limit=50
0.902 | 0.583 | search_minus_done; http://172.18.8.135:50400/match?q=GACTTCCTTTTTGTAGCGGCAGCAT&k=0&no_gap=0&offset=0&limit=48
0.906 | 0.005 | cgi_end;

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