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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:26:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

MAG: Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome.
CP065005.1:4251701-4251720
GAATGTCGTTGGTCTTGTATATGTTTATGT4251701ATGCTGTCGTTTTGCTGTTGGGTTCAAAAAATTTTAATTCCCTACTGTTT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_288.
FX657793.1:1401-1420
GGCGGCTCCGGTGACGAGGACGGAGAGGCC1401ATGCTGTCGTTTTGCTGTTGAGGATTGTCTCACGCGCTTCTCCCAAGCGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_12406.
FX733870.1:1408-1427
GGCGGCTCCGGTGACGAGGACGGAGAGGCC1408ATGCTGTCGTTTTGCTGTTGAGGATTGTCTCACGCGCTTCTCCCAAGCGG
TSA: Raphanus sativus RS21698 mRNA sequence.
JT806245.1:1240-1259
GGCGGCTCCGGTGACGAGGACGGAGAGGCC1240ATGCTGTCGTTTTGCTGTTGAGGATTGTCTCACGCGCTTCTCCCAAGCGG
Merodon equestris genome assembly, chromosome: 4.
OY284416.1:107645723-107645742
AAAGCACAAGCAATAAGCACACATAAATTT107645723ATGCTGTCGTTTTGCTGTTGTGTCATCGTATATTGTATCTCGTAAAGTAT
Sprattus sprattus genome assembly, chromosome: 12.
OY735296.1:570133-570152
GTCTTTGACTGGCATTTCTATAACCAATTT570133CAACAGCAAAACGACAGCATGTACACAATGCAACAAAAGCACGTCACCAT
Scomber scombrus genome assembly, chromosome: 1.
OY829918.1:1835710-1835729
TGAAATGAACACATAAATACTGAAAACATT1835710CAACAGCAAAACGACAGCATACAGCCTGAGCAGACATTCAAATGCACATG
Raphanus sativus mRNA, clone: RSCF18F09, 5' end sequence.
FY432470.1:308-327
CCGCTTGGGAGAAGCGCGTGAGACAATCCT308CAACAGCAAAACGACAGCATGGCCTCTCCGTCCTCGTCACCGGAGCCGCC
Raphanus sativus mRNA, clone: RSCF20N22, 5' end sequence.
FY433124.1:422-441
CCGCTTGGGAGAAGCGCGTGAGACAATCCT422CAACAGCAAAACGACAGCATGGCCTCTCCGTCCTCGTCACCGGAGCCGCC
Raphanus sativus mRNA, clone: RSCR17E24, 5' end sequence.
FY445050.1:393-412
CCGCTTGGGAGAAGCGCGTGAGACAATCCT393CAACAGCAAAACGACAGCATGGCCTCTCCGTCCTCGTCACCGGAGCCGCC
Raphanus sativus mRNA, clone: RSCS04L23, 5' end sequence.
FY447474.1:398-417
CCGCTTGGGAGAAGCGCGTGAGACAATCCT398CAACAGCAAAACGACAGCATGGCCTCTCCGTCCTCGTCACCGGAGCCGCC
Raphanus sativus mRNA, clone: RSCS20E15, 5' end sequence.
FY452980.1:394-413
CCGCTTGGGAGAAGCGCGTGAGACAATCCT394CAACAGCAAAACGACAGCATGGCCTCTCCGTCCTCGTCACCGGAGCCGCC
Raphanus sativus mRNA, clone: RSCS24D19, 5' end sequence.
FY454393.1:184-203
CCGCTTGGGAGAAGCGCGTGAGACAATCCT184CAACAGCAAAACGACAGCATGGCCTCTCCGTCCTCGTCACCGGAGCCGCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGCTGTCGTTTTGCTGTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGCTGTCGTTTTGCTGTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.328 | 0.319 | search_plus_done; http://172.18.8.135:50400/match?q=ATGCTGTCGTTTTGCTGTTG&k=0&no_gap=0&offset=0&limit=50
0.869 | 0.541 | search_minus_done; http://172.18.8.135:50400/match?q=CAACAGCAAAACGACAGCAT&k=0&no_gap=0&offset=0&limit=45
0.875 | 0.005 | cgi_end;

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