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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-12-16 19:13:50, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Bos mutus isolate yakQH1 chromosome 14.
CP027082.1:20656936-20656953
GGAGGTGGGCTGGATGAGGTCCTGAACACT20656936ATGGAAGGCAACGATTCTAGGAGAGGAGGAATCCAGGATGTAGAAGTC
Sequence 115 from Patent WO2012088289.
JA817778.1:29-46
TCAAAGAGCACTTACAAGGATCCAGACG29ATGGAAGGCAACGATTCTTACTCGAACTTGAGTTCATTCAGTGTCTCG
Sequence 354 from Patent WO2012088289.
JA818017.1:1-18
1ATGGAAGGCAACGATTCT
Sequence 115 from patent US 9702013.
KH919305.1:29-46
TCAAAGAGCACTTACAAGGATCCAGACG29ATGGAAGGCAACGATTCTTACTCGAACTTGAGTTCATTCAGTGTCTCG
Sequence 354 from patent US 9702013.
KH919544.1:1-18
1ATGGAAGGCAACGATTCT
Sequence 115 from patent US 10590490.
MO959582.1:29-46
TCAAAGAGCACTTACAAGGATCCAGACG29ATGGAAGGCAACGATTCTTACTCGAACTTGAGTTCATTCAGTGTCTCG
Sequence 354 from patent US 10590490.
MO959821.1:1-18
1ATGGAAGGCAACGATTCT
65JKBNM0_T3_017_H07_17MAR2005_049 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL588170.1:79-96
CGCCAAAGAGCACTTACAAGGATCCAGACG79ATGGAAGGCAACGATTCTTACTCGAACTTGAGTTCATTCAGTGTCTCG
RR1AF39TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV525740.1:199-216
CGCCAAAGAGCACTTACAAGGATCCTGACG199ATGGAAGGCAACGATTCTTACTTGAACTTGAATTCATTCAGTGTCTCG
RR2BC21TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV538962.1:171-188
CGCCAAAGAGCAGTTACAAGGATCCCGACG171ATGGAAGGCAACGATTCTTACTGGAACTTGAGTTCATTCAGTGTCTCG
RS1CQ84TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX890257.1:412-429
CGCCAAAGAGCACTTACAAGGATCCCGACG412ATGGAAGGCAACGATTCTTACTTGAACTTGAATTCATTCAGTGTCTCG
RS3BY55TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX903612.1:13-30
GGGATCCCGACG13ATGGAAGGCAACGATTCTTACTTGAACTTGAATTCATTCAGTGTCTCA
RS3DG64TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EY947597.1:190-207
CGCCAAAGAGCACTTACAAGGATCCCGACG190ATGGAAGGCAACGATTCTTACTTGAACTTGAATTCATTCAGTGTCTCG
RR4F268TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD557959.1:175-192
CGCCAAAGAGCACTTACAAGGATCCTGACG175ATGGAAGGCAACGATTCTTACTTGAACTTGAATTCATTCAGTGTCTCG
RS3ES95TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD577713.1:175-192
CGCCAAAGAGCACTTACAAGGATCCTGACG175ATGGAAGGCAACGATTCTTACTTGAACTTGAATTCATTCAGTGTCTCG
RR2GY17TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD973149.1:217-234
CGCCAAAGAGCACTTACAAGGATCCTGACG217ATGGAAGGCAACGATTCTTACTTGAACTTGAATTCATTCAGTGTCTCG
BN24DYSC_UP_017_C06_1FEB2008_044 BN24DYSC Brassica napus cDNA 5', mRNA sequence.
FG572247.1:175-192
CGCCAAAGAGCACTTACAAGGATCCAGACG175ATGGAAGGCAACGATTCTTACTCGAACTTGAGTTCATTCAGTGTCTCG
CBWT5289.g1 CBWT Trichoderma atroviride culture induced to conidiate by mycelial injury Trichoderma atroviride cDNA clone CBWT5289 3', mRNA sequence.
GE275510.1:35-52
GGGGCATGGCATTCTGGGAATAAATGGGCA35ATGGAAGGCAACGATTCTTATTTTTATGGCATGACACGGTCCTTTTAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_23172.
FX792678.1:181-198
CGCCAAAGAGCACTTACAAGGATCCCGACG181ATGGAAGGCAACGATTCTTACTTGAACTTGAATTCATTCAGTGTCTCG
TSA: Raphanus sativus RS14523 mRNA sequence.
JT799070.1:207-224
CCGCAAAGAGCACTTACAAGGATCCCGACG207ATGGAAGGCAACGATTCTTACTTGAACTTGAATTCATTCAGTGTCTCG
Trichoderma atroviride strain P1 chromosome 2.
CP084936.1:6408346-6408363
GGGGCATGGCATTCTGGGAATAAATGGGCA6408346ATGGAAGGCAACGATTCTTATTTTTATGGCATGACACGGTCCTTTTAC
Brassica napus cultivar Xiang5A chromosome 10.
CP151905.1:20672651-20672668
GGCCAAAGAGCACTTACAAGGATCCAGACG20672651ATGGAAGGCAACGATTCTTACTCGAACTTGAGTTCATTCAGTGTCTCG
Brassica napus genome assembly, chromosome: A10.
HG994364.1:14733247-14733264
GGCCAAAGAGCACTTACAAGGATCCAGACG14733247ATGGAAGGCAACGATTCTTACTCGAACTTGAGTTCATTCAGTGTCTCG
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:52726182-52726199
GTCCAAAGAGCACTTACAAGGATCCAGACG52726182ATGGAAGGCAACGATTCTTACTCGAACTTGAGTTCATTCAGTGTCTCG
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:26668626-26668643
GGCCAAAGAGCACTTACAAGGATCCCGACG26668626ATGGAAGGCAACGATTCTTACTTGAACTTGAATTCATTCAGTGTCTCG
Antitrichia curtipendula genome assembly, chromosome: 4.
OX579636.1:38332163-38332180
AGGTTTTTCTGCACTCGAACAACCTCTAGA38332163ATGGAAGGCAACGATTCTAAAGTACTGCGGCGCGTTGAACAAGGCTTC
Cardamine chenopodiifolia genome assembly, chromosome: 6.
OZ000464.1:12200703-12200720
GGCCAAAAAACATTTACAAGGATCCCGACG12200703ATGGAAGGCAACGATTCTTACTGGAGCTTGAATTCATTCAATGTCTCG
Cardamine chenopodiifolia genome assembly, chromosome: 30.
OZ000488.1:11785301-11785318
GGCCAAAAAACACTTACAAGGATCCCGACG11785301ATGGAAGGCAACGATTCTTACTGGAGCTTGAATTCATTCAGTGTCTCG
Cardamine hirsuta genome assembly, chromosome: 3.
OZ156420.1:19488291-19488308
GGCCAAAGAACACTTACAAGGATCCCGACG19488291ATGGAAGGCAACGATTCTTACTTGAACTTGAATTCATTCAATGTCTCG
Brassica nigra genome assembly, chromosome: 2.
OZ173172.1:35245268-35245285
GGCCAAAGATCACTTACAAGGATCCCGATG35245268ATGGAAGGCAACGATTCTTACTAGAACTTGAATTCATTCAGTGTCTCG
Polypogon viridis genome assembly, chromosome: 11.
OZ174317.1:14497897-14497914
CACCGGAAGCCATCCGGCAAGATCCAACAG14497897ATGGAAGGCAACGATTCTTTCAGAGCTATTACAAATGTCCACTCTGCA
Plagiothecium denticulatum genome assembly, chromosome: 2.
OZ174621.1:15484471-15484488
GTTTAACAACAAGACAAAATGACTCCTAAA15484471ATGGAAGGCAACGATTCTGATTCTAGAAAACGTGAAAATTGTTTTCCG
Vespula vulgaris genome assembly, chromosome: 2.
FR997669.1:15187732-15187749
CATCGTGCTTAATGCACTAATTAAAATCTC15187732ATGGAAGGCAACGATTCTTTGTTTCGTTTAACGCTCCAAACGGAAAGC
Vespula germanica genome assembly, chromosome: 1.
HG996528.1:16304871-16304888
CATCGTGCTTAATGCACTAATTAAAATCTC16304871ATGGAAGGCAACGATTCTTTGTTTCGTTTAACGCTCCAAACGGAAAGC
Limnephilus lunatus genome assembly, chromosome: 4.
OU830595.1:34090262-34090279
TTAACCGAGAATGGAATGCCAATTAACTGC34090262ATGGAAGGCAACGATTCTGACCATTACACCACTACAACTATTGTAAGA
Gasteruption jaculator genome assembly, chromosome: 15.
OX463775.1:8674932-8674949
CGTGGAGAAGATGTTGGGTTCGAGGACATG8674932ATGGAAGGCAACGATTCTATCCTCGCTGCGAATCTTCAAGAACCTCTG
Stenurella melanura genome assembly, chromosome: 1.
OY757309.1:56272709-56272726
TGCGCGCTGGAAACTATAGCGTGATGACCG56272709ATGGAAGGCAACGATTCTTTAAAATTTCAATGAGTAATCCCAGAGAAT
Agonopterix alstromeriana genome assembly, chromosome: 2.
OZ004663.1:16379033-16379050
CGCATCTTTGATGCAATTATTATTGCACCC16379033ATGGAAGGCAACGATTCTGATACTCTTTTCTTACTAAAACATAGGGAA
Triaenodes bicolor genome assembly, chromosome: 4.
OZ194528.1:12205910-12205927
TTGAGCTAAAGTAATCGAGCCGGATAGCCC12205910ATGGAAGGCAACGATTCTAACCCATTTCAGCCGCTCTGAAAAGAAATG
Gillmeria pallidactyla genome assembly, chromosome: 12.
OZ197258.1:37331363-37331380
CATTCTTTCATCAATGTATGGACCTCTGGT37331363ATGGAAGGCAACGATTCTTACCTCTTCCCCAAGAAGGCTGGCCCTTGG
RR2BC21JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV542860.1:689-706
CGAGACACTGAATGAACTCAAGTTCCAGTA689AGAATCGTTGCCTTCCATCGTCGGGATCCTTGTAACTGCTCTTTGGCG
CBWT5289.b1 CBWT Trichoderma atroviride culture induced to conidiate by mycelial injury Trichoderma atroviride cDNA clone CBWT5289 5', mRNA sequence.
GE275509.1:291-308
GTAAAAGGACCGTGTCATGCCATAAAAATA291AGAATCGTTGCCTTCCATTGCCCATTTATTCCCAGAATGCCATGCCCC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_14529.
FX665810.1:676-693
CGAGACACTGAATGAATTCAAGTTCAAGTA676AGAATCGTTGCCTTCCATCGTCGGGATCCTTGTAAGTGCTCTTTGGCG
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:6042241-6042258
CGAGACACTGAATGAACTCAAGTTCGAGTA6042241AGAATCGTTGCCTTCCATCGTCTGGATCCTTGTAAGTGCTCTTTGGCC
Avena sativa genome assembly, chromosome: 4D.
OU342395.1:291443187-291443204
CAAGGTTTTCTCATACTTTGAGAGTAAAAT291443187AGAATCGTTGCCTTCCATACATAACATACTAGGCATACAAATGGTTTC
Avena atlantica genome assembly, chromosome: 4A.
OU342736.1:398702319-398702336
CAAGGTTTTCTCATACTTTGAGAGTAAAAT398702319AGAATCGTTGCCTTCCATACATAAAATAGTAGGCATACAAATGGTTTC
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:6310758-6310775
CGAGACACTGAATGAATTCAAGTTCAAGTA6310758AGAATCGTTGCCTTCCATCGTCGGGATCCTTGTAAGTGCTCTTTGGCC
Cardamine flexuosa genome assembly, chromosome: 3.
OY743216.1:7019815-7019832
CGAGACATTGAATGAATTCAAGTTCAAGTA7019815AGAATCGTTGCCTTCCATCGTCGGGATCCTTGTAAGTGTTCTTTGGCC
Cochlearia excelsa genome assembly, chromosome: 4.
OY748330.1:2514232-2514249
CGAGACATTGCATGAATTCGAGCTCGAGTA2514232AGAATCGTTGCCTTCCATCATCAGGATCCTTGAAAGCGTTCTTCGTCC
Cardamine chenopodiifolia genome assembly, chromosome: 14.
OZ000472.1:14027078-14027095
CGAGACATTGAATGAATTCAAGCTCCAGTA14027078AGAATCGTTGCCTTCCATCATCGGGATCCTTGAAAGTGTTTTTTGGCC
Cardamine chenopodiifolia genome assembly, chromosome: 22.
OZ000480.1:6570485-6570502
GCGAGCATTGAATGAATTCAAGTTCCAGTA6570485AGAATCGTTGCCTTCCATCGTCGGGATCCTTGTAAGTGTTCTTTGGCC
Polypogon viridis genome assembly, chromosome: 11.
OZ174317.1:25802671-25802688
TGCAGAGTGGACATTTGTAATAGCTCTGAA25802671AGAATCGTTGCCTTCCATCTGTTGGATCTTGCCGGATGGCTTCCGGTG
Ranunculus sceleratus genome assembly, chromosome: 6.
OZ205668.1:49188150-49188167
AACCCACGCGAGGGCGACGGAAAAGAACAC49188150AGAATCGTTGCCTTCCATCCACCATTAATCCACCACCGGCCATGAGTG
Autographa pulchrina genome assembly, chromosome: Z.
FR997762.1:6729862-6729879
AAGCTTGCAAGCTTCAATTGGAGCTTGGAG6729862AGAATCGTTGCCTTCCATGCGATGCTGCGGATTCAGCTCGTACTCTGC
Stenurella melanura genome assembly, chromosome: 1.
OY757309.1:203131842-203131859
AAATTTGGTTGCCACGCCTTCTCTGGCCAA203131842AGAATCGTTGCCTTCCATGCTAGAGTGGCAGGTATCCAGATCAGAGTC
Sepia lycidas genome assembly, chromosome: 41.
OZ010611.1:41113454-41113471
TTGGGCCCTTTGGATTAAAAAAGGGTCTGT41113454AGAATCGTTGCCTTCCATCAGCATGTCTGATGCTAACCTCCAGGAAAG
Schoenobius gigantella genome assembly, chromosome: 3.
OZ012543.1:23606149-23606166
TTATATCGATAAAGTGAGACTTTCGCTTAA23606149AGAATCGTTGCCTTCCATGACTTCCTTCCTTCCATGGATTTTTTTAGA
Ceratothoa steindachneri genome assembly, chromosome: 1.
OZ018317.1:129632218-129632235
AGAAAAGACATTAAACCATTTGATAAAGAA129632218AGAATCGTTGCCTTCCATGAACGTGGCAAATCAACACGTGATATCTCT
Sepia esculenta genome assembly, chromosome: 42.
OZ038516.1:42238676-42238693
CTTGGGCCTTTTGTATTAAAAAGGGTCTGT42238676AGAATCGTTGCCTTCCATCAGCATGCCTGATGCTAGCCTCCAGGAAAG
Gillmeria ochrodactyla genome assembly, chromosome: 12.
OZ204482.1:6475006-6475023
CTTAATACCAGCCTTCTTGGGGAAGAGGTA6475006AGAATCGTTGCCTTCCATACCAGAGGTCCATACATTGATGAAAGAATG
Gillmeria ochrodactyla genome assembly, chromosome: 12.
OZ204511.1:6015373-6015390
CTTAATACCAGCCTTCTTGGGGAAGAGGTA6015373AGAATCGTTGCCTTCCATACCAGAGGTCCATACATTGATGAAAGAATG
Anilocra frontalis genome assembly, chromosome: 4.
OZ209258.1:374362086-374362103
TTTATAATATATTTTATTTGTTGCAATGAT374362086AGAATCGTTGCCTTCCATTCGTAACAAATTGGTGCCTACAGACCCGTA
Clathrolucina costata genome assembly, chromosome: 3.
OZ218121.1:59938808-59938825
TTCACTAAAAGAGGAGGTTACTCTTGCGAA59938808AGAATCGTTGCCTTCCATGTGAATAGGGGTCAACTCTCAAAGAAAAGA
Montipora capricornis genome assembly, chromosome: 10.
OZ218534.1:6761513-6761530
TTACTACAAAATGATTCTTTTAGCAAAGAA6761513AGAATCGTTGCCTTCCATGTTAGGTCATGACATGTTGCTGCCAAAGCA
Furcifer pardalis isolate Fpa_1 chromosome 3.
CP126892.1:188998120-188998137
ATCCCATATGCTTGTTGTAGTGGTCCTTCC188998120AGAATCGTTGCCTTCCATTCAAGTCAACAAGAGACTCCTCAAACTCAT
Raja brachyura genome assembly, chromosome: 39.
OY740820.1:22421207-22421224
AGTTTGTGGGCGGCACGGTGGAGCAGCGGT22421207AGAATCGTTGCCTTCCATCGAATGCAGCGCCGGAGACCCGTGTTCGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGGAAGGCAACGATTCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGGAAGGCAACGATTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.259 | 1.250 | search_plus_done; http://172.18.8.135:50800/match?q=ATGGAAGGCAACGATTCT&k=0&no_gap=0&offset=0&limit=50
1.561 | 0.301 | search_minus_done; http://172.18.8.135:50800/match?q=AGAATCGTTGCCTTCCAT&k=0&no_gap=0&offset=0&limit=10
1.578 | 0.017 | cgi_end;

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