GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 01:44:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:14155175-14155194
TTCATCAACTCAAATAATATCCCTCCCAAA14155175ATGGACGATCAAGTGCTTAGGAATAAAAAAAATAATCAAATGTTTCATCA
Brassica napus genome assembly, chromosome: A02.
HG994356.1:13969199-13969218
TTCATCAACTCAAATAATATCCCTCCCAAA13969199ATGGACGATCAAGTGCTTAGGAATAAAAAAAATAATCAAATGTTTCATCA
Brassica rapa genome, scaffold: A02.
LR031573.1:13679451-13679470
TTCATCAACTCAAATAATATCCCTCCCAAA13679451ATGGACGATCAAGTGCTTAGGAATAAAAAAAATAATCAAATGTTTCATCA
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:28038872-28038891
TGTTTTCATCAACTCAAAGAATATCCCAAA28038872ATGGACGATCAAGTGCTTAGGAATAAAAAAAATGAATCAAATGTTCATCA
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:13753120-13753139
TTCATCAACTCAAATAATATCCCTCCCAAA13753120ATGGACGATCAAGTGCTTAGGAATAAAAAAAATAATCAAATGTTTCATCA
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:40055558-40055577
TGATGAACATTTGATTCATTTTTTTTATTC40055558CTAAGCACTTGATCGTCCATTTTGGGATATTCTTTGAGTTGATGAAAACA
Brassica napus genome assembly, chromosome: C02.
HG994366.1:27135056-27135075
TGATGAACATTTGATTCATTTTTTTTATTC27135056CTAAGCACTTGATCGTCCATTTTGGGATATTCTTTGAGTTGATGAAAACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGGACGATCAAGTGCTTAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGGACGATCAAGTGCTTAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.117 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=ATGGACGATCAAGTGCTTAG&k=0&no_gap=0&offset=0&limit=50
0.139 | 0.022 | search_minus_done; http://172.18.8.135:50400/match?q=CTAAGCACTTGATCGTCCAT&k=0&no_gap=0&offset=0&limit=45
0.141 | 0.001 | cgi_end;

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