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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 17:59:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JP 2005185101-A/26423: Full length cDNA of plant and the use thereof.
HV091545.1:519-538
TGAAGAAAAAGTCGATGTCATCATATCTGA519ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATCT
SCEPAM2012H11.g AM2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCEPAM2012H11 5', mRNA sequence.
CA083361.1:90-109
CGAAGAAAAAGTTGATGTCATCATATCTGA90ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGAAGCATAATTT
SCCCRZ1003C09.g RZ1 Saccharum hybrid cultivar SP80-3280 cDNA clone SCCCRZ1003C09 5', mRNA sequence.
CA146995.1:467-486
CGAAGAAAAAGTTGATGTCATCATATCTGA467ATGGATGGGCTACATGCTTCTGGATGAGAGTATGCTGGGAAGCATAATTT
SCCCRZ1003H08.g RZ1 Saccharum hybrid cultivar SP80-3280 cDNA clone SCCCRZ1003H08 5', mRNA sequence.
CA147050.1:467-486
CGAAGAAAAAGTTGATGTCATCATATCTGA467ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGAAGCATAATTT
SCEPRZ3087B01.g RZ3 Saccharum hybrid cultivar SP80-3280 cDNA clone SCEPRZ3087B01 5', mRNA sequence.
CA156761.1:468-487
CGAAGAAAAAGTTGATGTCATCATATCTGA468ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGAAGCATAATTT
OSIIEa05M10.f OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa05M10 5', mRNA sequence.
CB620508.1:509-528
TGAAGAAAAAGTCGATGTCATCATATCTGA509ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATCT
49849rsiceh_20686.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence.
CK048345.1:329-348
TGAAGAAAAAGTCGATGTCATCATATCTGA329ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATCT
58844rsicek_14834.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence.
CK059682.1:530-549
TGACGAAAAAGTCGATGTCATCATATCTGA530ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATC
53240rsicek_1377.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence.
CK062573.1:131-150
TGAAGAAAAAGTCGATGTCATCATATCTGA131ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATCT
71760rsicem_24754.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence.
CK066568.1:109-128
TGAAGAAAAAGTCGATGTCATCATATCTGA109ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATCT
85332rsicen_27437.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence.
CK084063.1:465-484
TGAAGAAAAAGTCGATGTCATCATATCTGA465ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATCT
GR__Eb04K16.f GR__Eb Gossypium raimondii cDNA clone GR__Eb04K16 5', mRNA sequence.
CO122835.1:282-301
TGACGAGGAGGTTGATGTAATAATTTCAGA282ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTGGGAAGTGTTATTA
EST1054293 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT543653.1:713-732
TGACGAGGAGGTTGATGTAATAATTTCAGA713ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTTG
EST1057666 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT547026.1:664-683
TGACGAGGAGGTTGATGTAATAATTTCAGA664ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTGGGAAGTGTTATTA
EST1059914 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT549274.1:603-622
TGACGAGGAGGTTGATGTAATAATTTCAGA603ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTGGGAAGTGTTATTA
EST1062126 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT551486.1:670-689
TGACGAGGAGGTTGATGTAATAATTTCAGA670ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTGGGAAGTGTTATTA
EST1068535 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT557895.1:716-735
TGACGAGGAGGTTGATGTAATAATTTCAGA716ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTGGGAAGTGTTATTA
EST1082182 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT571542.1:664-683
TGACGAGGAGGTTGATGTAATAATTTCAGA664ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTGGGAAGTGTTATTA
CGN-13606 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w13d6 5', mRNA sequence.
DV676267.1:422-441
TGATGAAGAAGTCGATGTTATCATCTCTGA422ATGGATGGGCTACATGCTTCTTTATGAGAGCATGCTANGAAGTGTGATTA
CGN-18506 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w23e20 5', mRNA sequence.
DV680067.1:388-407
TGATGAAGAAGTCGATGTTATCATCTCTGA388ATGGATGGGCTACATGCTTCTTTATGAGAGCATGCTAGGAAGTGTGATTA
CGN-21124 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w23e20 5', mRNA sequence.
DV681730.1:422-441
TGATGAAGAAGTCGATGTTATCATCTCTGA422ATGGATGGGCTACATGCTTCTTTATGAGAGCATGCTAGGAAGTGTGATTA
CGN-22681 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w23e22 5', mRNA sequence.
DV682676.1:424-443
TGATGAAGAAGTCGATGTTATCATCTCTGA424ATGGATGGGCTACATGCTTCTTTATGAGAGCATGCTAGGAAGTGTGATTA
000427AFBC005444HT (AFBC) Royal Gala pre-opened floral bud Malus domestica cDNA clone AFBC005444, mRNA sequence.
EB109713.1:76-95
TGATGAGGAGGTTGATGTTATAATTTCAGA76ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGAAGTGTGATCA
000427AFBC007259HT (AFBC) Royal Gala pre-opened floral bud Malus domestica cDNA clone AFBC007259, mRNA sequence.
EB109903.1:152-171
TGATGAGGAGGTTGATGTTATAATTTCAGA152ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGAAGTGTGATCA
UFL_129_83 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES846111.1:403-422
TGACGAGGAGGTTGATGTAATAATTTCAGA403ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTGGGAAGTGTTATTA
CCXF8141.b1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyon cDNA clone CCXF8141 5', mRNA sequence.
GT770489.1:338-357
CGAAGAAAAAGTGGATGTCATCATATCTGA338ATGGATGGGCTACATGCTTCTCCATGAGAGTATGCTGGGCAGCGTAATTT
mhczaa0_020611.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_020611.z1, mRNA sequence.
JG858256.1:349-368
TGACGAGGAGGTTGATGTAATAATTTCAGA349ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTGGGAAGTGTTATTA
A06-105A06 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK797407.1:31-50
GGACGAGGAGGTTGATGTAATAATTTCAGA31ATGGATGGGCTACATGCTTCTGTATGAGGTGATTGTATTATCCTGAACCT
TSA: Pyrus pyrifolia mRNA, contig: contig_38418unknown.
FX408946.1:270-289
TGATGAGGAGGTTGATGTTATAATTTCAGA270ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGAAGTGTGATCA
TSA: Sesamum indicum Locus_20933_Transcript_1/1_Confidence_1.000_Length_1683 mRNA sequence.
JP651643.1:458-477
TGATGACAAAGTTGATGTTATAGTTTCTGA458ATGGATGGGCTACATGCTTCTTTATGAGAGCATGCTGGGGAGTGTTATTA
TSA: Eriocheir sinensis Unigene7367_JingChaoZuZhi2 mRNA sequence.
JR714912.1:54-73
TCCAGAGAAAGTTGACGTGATTGTCAGTGA54ATGGATGGGCTACATGCTTCTGTATGAGACCATGCTGCCTTCTGTCCTCT
TSA: Eriocheir sinensis Unigene19804_All.Ersiasgt mRNA sequence.
KA675015.1:54-73
TCCAGAGAAAGTTGACGTGATTGTCAGTGA54ATGGATGGGCTACATGCTTCTGTATGAGACCATGCTGCCTTCTGTCCTCT
OR_ABa0212H11.r OR_ABa Oryza ridleyi genomic clone OR_ABa0212H11 3', genomic survey sequence.
DX303007.1:211-230
TGAAGAAAAAGTCGATGTCATCATATCTGA211ATGGATGGGCTACATGCTTCTGTATGAGGTATCTATAAATTCCATGTTTA
Oryza glaberrima DNA, clone: W0001-9-A13-51C05R1, left end.
FT544892.1:201-220
TGAAGAAAAAGTCGATGTCATCATATCTGA201ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Oryza sativa chromosome 10 B1288B10 genomic sequence, complete sequence.
AC146481.2:7549-7568
TGAAGAAAAAGTCGATGTCATCATATCTGA7549ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Oryza sativa Japonica Group cDNA clone:J033070C14, full insert sequence.
AK101865.1:519-538
TGAAGAAAAAGTCGATGTCATCATATCTGA519ATGGATGGGCTACATGCTTCTGTATGAGAGTATGCTGGGGAGTGTAATCT
Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
AP014966.1:18550597-18550616
TGAAGAAAAAGTCGATGTCATCATATCTGA18550597ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Oryza sativa indica subgroup Inn Ma Yebaw DNA, chromosome: 10.
AP027394.1:19333916-19333935
TGAAGAAAAAGTCGATGTCATCATATCTGA19333916ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
CP012618.1:16120009-16120028
TGAAGAAAAAGTCGATGTCATCATATCTGA16120009ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Oryza sativa Indica Group cultivar Shuhui498 chromosome 10, partial sequence.
CP018166.1:20688784-20688803
TGAAGAAAAAGTCGATGTCATCATATCTGA20688784ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Gossypium turneri isolate D10-2 chromosome D10_04.
CP032574.1:47872274-47872293
TGACGAGGAGGTTGATGTAATAATTTCAGA47872274ATGGATGGGCTACATGCTTCTGTATGAGGTGATTGTATTATCCTGAACCT
Oryza sativa Indica Group cultivar Minghui 63 chromosome 10.
CP054685.1:20638689-20638708
TGAAGAAAAAGTCGATGTCATCATATCTGA20638689ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Oryza sativa Indica Group cultivar Zhenshan 97 chromosome 10.
CP056061.1:21054952-21054971
TGAAGAAAAAGTCGATGTCATCATATCTGA21054952ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Jasminum sambac cultivar Hutoumoli linkage group Lg7.
CP073650.1:18250878-18250897
TGATGAAGAAGTTGATGTTATAGTTTCAGA18250878ATGGATGGGCTACATGCTTCTTTATGAGGTGATAATTAGTATCTTATGCG
Oryza sativa Japonica Group cultivar Changxianggeng 1813 chromosome 1.
CP101141.1:19707054-19707073
TGAAGAAAAAGTCGATGTCATCATATCTGA19707054ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Gossypium herbaceum isolate Zhongcao1 chromosome 4.
CP106690.1:108086064-108086083
TGACGAGGAGGTTGATGTAATAATTTCAGA108086064ATGGATGGGCTACATGCTTCTGTATGAGGTGATTGTATTATCCTGAACCT
Gossypium bickii isolate GPG1lz chromosome 4.
CP106717.1:111201402-111201421
TGACGAGGAGGTTGATGTAATAATTTCAGA111201402ATGGATGGGCTACATGCTTCTGTATGAGGTGATTGTATTATCCTGAACCT
Gossypium rotundifolium isolate GPK201 chromosome 4.
CP106725.1:170388914-170388933
TGACGAGGAGGTTGATGTAATAATTTCAGA170388914ATGGATGGGCTACATGCTTCTGTATGAGGTGATTGTATTATCCTGAACCT
Quercus variabilis isolate HB chromosome 1a.
CP129445.1:2026659-2026678
AGATGAGGAGGTTGATGTTATAATTTCCGA2026659ATGGATGGGCTACATGCTTCTCTATGAGGTGATTATAGAACTGTGCATGC
Oryza sativa Japonica Group cultivar Nipponbare isolate AGIS-1.0 chromosome 10.
CP132244.1:19219110-19219129
TGAAGAAAAAGTCGATGTCATCATATCTGA19219110ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Oryza sativa indica subgroup cultivar ZH8015 chromosome 10.
CP141106.1:20613347-20613366
TGAAGAAAAAGTCGATGTCATCATATCTGA20613347ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Warburgia ugandensis isolate CL-2023a chromosome 4.
CP141129.1:49121110-49121129
TGAGGAGCAGGTTGATGTCATAATTTCAGA49121110ATGGATGGGCTACATGCTTCTATATGAGGTAACTCTTTATTCTTTACAGT
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141965.1:40707905-40707924
TGATGAGGAGGTTGATGTTATAATTTCAGA40707905ATGGATGGGCTACATGCTTCTGTATGAGGTAGCTGTTAACATATCTGTAT
Paspalum notatum var. saurae isolate R1 chromosome 02.
CP144746.1:41820960-41820979
TGAAGAAAAAGTTGATGTCATCGTATCTGA41820960ATGGATGGGCTACATGCTTCTGTATGAGGTATATAGTGGTACTCTATAGT
Phyllostachys edulis cDNA clone: bphylf044j24, full insert sequence.
FP097548.1:509-528
TGAAGAAAAAGTTGATGTCATCATATCTGA509ATGGATGGGCTACATGCTTCTATATGAGAGTATGCTGGGGAGCGTAATTT
Brachypodium distachyon protein arginine methyltransferase 6 mRNA, partial cds.
KM399882.1:342-361
CGAAGAAAAAGTGGATGTCATCATATCTGA342ATGGATGGGCTACATGCTTCTCCATGAGAGTATGCTGGGCAGCGTAATTT
Sarcandra glabra protein arginine methyltransferase 6 mRNA, partial cds.
KM399885.1:342-361
CGATGAGGAGGTTGATGTCATTATTTCAGA342ATGGATGGGCTACATGCTTCTATATGAGAGCATGCTGTCCAGTGTAATTA
Gossypium raimondii protein arginine methyltransferase 6 mRNA, partial cds.
KM399887.1:342-361
TGACGAGGAGGTTGATGTAATAATTTCAGA342ATGGATGGGCTACATGCTTCTGTATGAGAGTATGTTGGGAAGTGTTATTA
Chloranthus japonicus protein arginine methyltransferase 6 mRNA, partial cds.
KM399896.1:342-361
TGATGAAGAAGTGGATGTCATTATTTCAGA342ATGGATGGGCTACATGCTTCTATATGAGAGCATGCTGTCCAGTGTAATAA
Cinnamomum camphora protein arginine methyltransferase 6 mRNA, partial cds.
KM399919.1:342-361
AGATGAGGAGGTTGATGTCATAATTTCAGA342ATGGATGGGCTACATGCTTCTATATGAGAGTATGCTCTCCAGTGTAATTA
Salicornia ramosissima genome assembly, chromosome: 6.
OX596237.1:56729272-56729291
TGATGAGGAGGTAGATGTGATAATATCTGA56729272ATGGATGGGCTACATGCTTCTTTATGAGGTTAAAATTCAAACATGTGTGT
Oryza sativa genome assembly, chromosome: 10.
OX637255.1:17681497-17681516
TGAAGAAAAAGTCGATGTCATCATATCTGA17681497ATGGATGGGCTACATGCTTCTGTATGAGGTATATATAAGTTCCATGTTTA
Hibiscus tridactylites genome assembly, chromosome: 3.
OY288267.1:39438857-39438876
TGACGAGGAGGTTGATGTAATAATTTCAGA39438857ATGGATGGGCTACATGCTTCTGTATGAGGTGATTGTATTATCCTGAACTC
Hibiscus tridactylites genome assembly, chromosome: 7.
OY288271.1:40850179-40850198
TGACGAGGAGGTTGATGTAATAATTTCAGA40850179ATGGATGGGCTACATGCTTCTGTATGAGGTGATTGTATTATCCTGAACTC
Hibiscus tridactylites genome assembly, chromosome: 17.
OY288281.1:48639728-48639747
TGACGAGGAGGTTGATGTAATAATTTCAGA48639728ATGGATGGGCTACATGCTTCTGTATGAGGTAATTGTATTATCCTGAATAT
Pyrus communis genome assembly, chromosome: 6.
OY757073.1:29820493-29820512
TGATGAGGAGGTTGATGTTATAATTTCAGA29820493ATGGATGGGCTACATGCTTCTGTATGAGGTAGCTGTTAACGTATCTGTAT
Cornus suecica genome assembly, chromosome: 8.
OY998245.1:23708981-23709000
CGATGAAGAGGTTGATGTAATCATTTCAGA23708981ATGGATGGGCTACATGCTTCTGTATGAGGTGATTATTCAATTTTTTGCTT

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