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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 15:20:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Canis lupus familiaris breed Labrador retriever chromosome 34a.
CP050605.1:35491092-35491109
AAAAATGTAAATTAGATGTTGCTTGTGTGT35491092ATGGCTACCTCCTCCCTAAAGAGCCACCCAAGTTGGGGAGACTTGGTG
Canis lupus familiaris breed Labrador retriever chromosome 34b.
CP050608.1:35475330-35475347
AAAAATGTAAATTAGATGTTGCTTGTGTGT35475330ATGGCTACCTCCTCCCTAAAGAGCCACCCAAGTTGGGGAGACTTGGTG
Martes martes genome assembly, chromosome: 4.
OY734066.1:36530238-36530255
TTCACTGAAGTTTCTCTTTTTATCTTGCAA36530238ATGGCTACCTCCTCCCTACATCTTCACGTGGTCTTTCCTCTGTGTGTT
Sequence 6136 from patent US 10006042.
MI850863.1:29-46
CCTCAGTCTCCTTAAAAAAATGGCGACC29ATGGCTACCTCCTCCCTAGCCTCCAAACCCAAGACCTCCCTCCTCGAC
Sequence 6136 from patent US 10337023.
MO174030.1:29-46
CCTCAGTCTCCTTAAAAAAATGGCGACC29ATGGCTACCTCCTCCCTAGCCTCCAAACCCAAGACCTCCCTCCTCGAC
Sequence 6136 from patent US 10774340.
MV707777.1:29-46
CCTCAGTCTCCTTAAAAAAATGGCGACC29ATGGCTACCTCCTCCCTAGCCTCCAAACCCAAGACCTCCCTCCTCGAC
Sequence 6136 from patent US 11499161.
OO875558.1:29-46
CCTCAGTCTCCTTAAAAAAATGGCGACC29ATGGCTACCTCCTCCCTAGCCTCCAAACCCAAGACCTCCCTCCTCGAC
EG-A01_003_B05 Oil palm normal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN599381.1:34-51
ACCCTCAGTCTCCTTAAAAAAATGGCGACC34ATGGCTACCTCCTCCCTAGCCTCCAAACCCAAGACCTCCCTCCTCGAC
EoEST1354 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-1391 5' similar to putative thiamine biosynthesis protein, mRNA sequence.
EL930518.1:42-59
ACCCTCACTCTCCTTAAAAAAATGGCGACC42ATGGCTACCTCCTCCCTAGCCTCCAAGCCCAAGACCTCCCTCCTCGAC
Elaeis guineensis EST, clone (6lib)_isotig18977.
LM622212.1:24-41
GTCTCCTTCAAAAAATGGCGACC24ATGGCTACCTCCTCCCTAGCCTCCAAGCCCAAGACCTCCCTCCTCGAC
104_470_11011227_148_34414_010 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11011227, genomic survey sequence.
CW102226.1:212-229
CTGTCAACCAAACCAAACATTGAAACATGT212ATGGCTACCTCCTCCCTACTGCATGCCTACCTCCTCCCAATCTGAACA
fsbb001f133m22k0 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone fsbb001f133m22, genomic survey sequence.
CW423803.1:557-574
CTGTCAACCAAACCAAACATTGAAACATGT557ATGGCTACCTCCTCCCTACTGCATGCCTACCTCCCCCCAATCTGAACA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:99699985-99700002
TCAGTTAAAGAGAGTATCTCTGCCTGTAGT99699985ATGGCTACCTCCTCCCTAATTTTACCTAGTATAGTTGCCTTAATATCA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 5.
CP124727.1:99500174-99500191
TCAGTTAAAGAGAGTATCTCTGCCTGTAGT99500174ATGGCTACCTCCTCCCTAATTTTACCTAGTATAGTTGCCTTAATATCA
Quercus cerris genome assembly, chromosome: 1.
OY770006.1:45623807-45623824
GCTTTAGTAGGATGGATCTGTTTGAGAGCA45623807ATGGCTACCTCCTCCCTAGTGAAGCTTCTATTTAGGCTTTCATTCATT
Galeopsis tetrahit genome assembly, chromosome: 16.
OY776134.1:65666667-65666684
TACTATTTTGGGACCAAAGTTTCTTCCCTA65666667ATGGCTACCTCCTCCCTAAAAGATAGTCATTTTTTTTCTTTTTTTAGA
Alisma plantago-aquatica genome assembly, chromosome: 2.
OY856410.1:244585455-244585472
GTAACCCCCTCTGTTGTGCACCACAACATA244585455ATGGCTACCTCCTCCCTACTCTGTTGACAAGCACACACTCTCCCTAGG
Alisma plantago-aquatica genome assembly, chromosome: 5.
OY856413.1:205365694-205365711
GATGATCCTAAATCATCACGTTGACACATA205365694ATGGCTACCTCCTCCCTAATATGATGGAGAATGTGGTGAGGACTATAG
Canis lupus genome assembly, chromosome: 34.
HG994410.1:10015501-10015518
CACCAAGTCTCCCCAACTTGGGTGGCTCTT10015501TAGGGAGGAGGTAGCCATACACACAAGCAACATCTAATTTACATTTTT
Podarcis lilfordi genome assembly, chromosome: 8.
OX395133.1:10048256-10048273
TAGCTCCTGGTAGGAGAGCAGCAGCCAGGC10048256TAGGGAGGAGGTAGCCATCACCAACTTGAATAACCTCTGAGTAGATAT
Cinclus cinclus genome assembly, chromosome: Z.
OY759680.1:43298214-43298231
CCACATCATGTATTGCCATGCTCAGCAGGC43298214TAGGGAGGAGGTAGCCATGAGGGCTGCTGCTCAGGAGCTGGCCAGACT
Capsicum annuum Takanotsume DNA, chromosome 7, sequence.
AP026702.1:140784834-140784851
TGATATTAAGGCACCTAATCTGGGTGATAT140784834TAGGGAGGAGGTAGCCATACTAAAGAAAGAAATACCCTCCCTCACTGA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:142715425-142715442
TGATATTAAGGCACCTAATCTGGGTGATAT142715425TAGGGAGGAGGTAGCCATACTAAAGAAAGAAATACCCTCCCTCACTGA
Quercus variabilis isolate HB chromosome 2b.
CP129434.1:50733589-50733606
AATGAATGAAAGCCTAAACAGAAGCTTCAC50733589TAGGGAGGAGGTAGCCATTGCTCTCAAACAGATCCATCCTACTAAAGC
Quercus variabilis isolate HB chromosome 2a.
CP129446.1:51394715-51394732
AATGAATGAAAGCCTAAACAGAAGCTTCAT51394715TAGGGAGGAGGTAGCCATTGCTCTCAAACAGATCCATCCTACTAAAGC
Sorghum bicolor cultivar Hongyingzi chromosome 2.
CP137826.1:65663306-65663323
TGTTCAGATTGGGAGGAGGTAGGCATGCAG65663306TAGGGAGGAGGTAGCCATACATGTTTCAATGTTTGGTTTGGTTGACAG
Sorghum bicolor cultivar Huandiaonuo chromosome 2.
CP137836.1:63680057-63680074
TGTTCAGATTGGGAGGAGGTAGGCATGCAG63680057TAGGGAGGAGGTAGCCATACATGTTTCAATGTTTGGTTTGGTTGACAG
Galeopsis tetrahit genome assembly, chromosome: 9.
OY776127.1:82620393-82620410
TCTAAAAAAAGAAAAAACATGATTATCTTT82620393TAGGGAGGAGGTAGCCATTAGGGAAGAAACTTTGGTCCCAAAATAGTA
Laspeyria flexula genome assembly, chromosome: 13.
LR989962.1:1860276-1860293
GCGGCAGATTAAGCTATCAAATAAAAAGAG1860276TAGGGAGGAGGTAGCCATTTATTCGAAGCACTAGGAGAGGGGTCACTT
Pyrausta nigrata genome assembly, chromosome: 7.
OX438943.1:9601098-9601115
TCATATTATTTCAGGAACCAATATTGTGAC9601098TAGGGAGGAGGTAGCCATCAAATTAGAATGTATAAAGACAAGACACCC
Acholoe squamosa genome assembly, chromosome: 6.
OX439040.1:70087736-70087753
TTACCAGGGGTGAATCCAGAAGGGGTGGTC70087736TAGGGAGGAGGTAGCCATAGGTAAATTGGGTCTAGGGGGCACAGCCGG
Ophion ellenae genome assembly, chromosome: 5.
OY723389.1:35509794-35509811
GACTTGCAGTGAGGCGTGAACGTTTGCAAA35509794TAGGGAGGAGGTAGCCATTTATCGCAGATTGTGTTCCACACATAACCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGGCTACCTCCTCCCTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGGCTACCTCCTCCCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.653 | 0.644 | search_plus_done; http://172.18.8.135:50400/match?q=ATGGCTACCTCCTCCCTA&k=0&no_gap=0&offset=0&limit=50
0.784 | 0.131 | search_minus_done; http://172.18.8.135:50400/match?q=TAGGGAGGAGGTAGCCAT&k=0&no_gap=0&offset=0&limit=32
0.794 | 0.010 | cgi_end;

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