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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:48:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 7.
CP141916.1:21497828-21497847
TTTCAATCACTCTACTTGGCCTTTGTAATC21497828ATGGCTCCTATTGCCATCATTACTATGGAAAGCCCTCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:20504812-20504831
TTTCAATCACTCTACTTGGCCTTTGTAATC20504812ATGGCTCCTATTGCCATCATTACTATGGAAAGCCCTCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:15001695-15001714
TTTCAATCACTCTACTTGGCCTTTGTAATC15001695ATGGCTCCTATTGCCATCATTACTATGGAAAGCCCTCTCTTTCTCTTTCT
Malus x robusta genome assembly, chromosome: 10.
OY720334.1:19661342-19661361
TTTCAGTCACTCTACTTGGCCTTTGTAATC19661342ATGGCTCCTATTGCCATCATTACTATGGAAAGCCCTCTCTCTCTCTCTCT
Neostethus bicornis genome assembly, chromosome: 22.
LR738552.1:23048153-23048172
AAGGGCTCGACCAATGAGCCTGTGTTACCT23048153ATGATGGCAATAGGAGCCATTCACGGCCATCATAGGCAACACAGGCTCAT
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141959.1:15658600-15658619
AGAGAGAGAGAGAGAGGGCTTTCCATAGTA15658600ATGATGGCAATAGGAGCCATGATTACAAAGGCCAAGTAGAGTGACTGAAA
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:15623500-15623519
AGAGAGAGAGAGAGAGGGCTTTCCATAGTA15623500ATGATGGCAATAGGAGCCATGATTACAAAGGCCAAGTAGAGTGATTGAAA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:15646680-15646699
TGAGAGAGAGAGAGAGGGCTTTCCATAGTA15646680ATGATGGCAATAGGAGCCATGATTACAAAGGCCAAGTAGAGTGATTGAAA
Malus sylvestris genome assembly, chromosome: 7.
OU696509.1:15776055-15776074
TGAGAGAGAGAGAGAGGGCTTTCCATAGTA15776055ATGATGGCAATAGGAGCCATGATTACAAAGGCCAAGTAGAGTGATTGAAA
Malus domestica genome assembly, chromosome: 7.
OU696683.1:15273813-15273832
AGAGAGAGAGAGAGAGGGCTTTCCATAGTA15273813ATGATGGCAATAGGAGCCATGATTACAAAGGCCAAGTAGAGTGATTGAAA
Malus domestica genome assembly, chromosome: 7.
OU744548.1:16275943-16275962
AGAGAGAGAGAGAGAGGGCTTTCCATAGTA16275943ATGATGGCAATAGGAGCCATGATTACAAAGGCCAAGTAGAGTGATTGAAA
Malus domestica genome assembly, chromosome: 7.
OU744959.1:15262133-15262152
AGAGAGAGAGAGAGAGGGCTTTCCATAGTA15262133ATGATGGCAATAGGAGCCATGATTACAAAGGCCAAGTAGAGTGATTGAAA
Malus domestica genome assembly, chromosome: 7.
OU744997.1:15674857-15674876
TGAGAGAGAGAGAGAGGGCTTTCCATAGTA15674857ATGATGGCAATAGGAGCCATGATTACAAAGGCCAAGTAGAGTGATTGAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGGCTCCTATTGCCATCAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGGCTCCTATTGCCATCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.165 | 0.156 | search_plus_done; http://172.18.8.135:50400/match?q=ATGGCTCCTATTGCCATCAT&k=0&no_gap=0&offset=0&limit=50
0.261 | 0.096 | search_minus_done; http://172.18.8.135:50400/match?q=ATGATGGCAATAGGAGCCAT&k=0&no_gap=0&offset=0&limit=46
0.267 | 0.006 | cgi_end;

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