GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:58:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

JP 2001204477-A/1: UDP-D-Glucose: remonoid glucosyl transferase gene.
E49068.1:50-73
GCCAATTTTAGAACAAATCATTCGAGAATA50ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
JP 2001204477-A/6: UDP-D-Glucose: remonoid glucosyl transferase gene.
E49073.1:1-24
1ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
JP 2001204477-A/7: UDP-D-Glucose: remonoid glucosyl transferase gene.
E49074.1:1-24
1ATGGGAACTGAATCTCTTGTTCAT
Sequence 136442 from Patent WO2008034648.
FB917169.1:1-24
1ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
Sequence 137058 from Patent WO2008034648.
FB917785.1:1-24
1ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
Sequence 136442 from Patent EP2090662.
HB787228.1:1-24
1ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
Sequence 137058 from Patent EP2090662.
HB787844.1:1-24
1ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
UCRCS01_03bc03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03bc03, mRNA sequence.
CB291676.1:61-84
GCCAATTTTAGAACAAATCATTCGAGAATA61ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
UCRCS01_05dh08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dh08, mRNA sequence.
CB293353.1:72-95
CCCTATTTTAGAACAAATCATTCGAGAATA72ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
USDA-FP_124000-812 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-76_G05 5', mRNA sequence.
CF509305.1:44-67
GCCAATTTTAGAACAAATCATTCGAGAATA44ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
CGF1004382_A11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IVF_A11 5', mRNA sequence.
CK936462.1:84-107
GCCAATTTTAGAACAAATCATTCGAGAATA84ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
UCRCS06_0001A12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A12, mRNA sequence.
CN188912.1:68-91
GCCAATTTTAGAACAAATCATTCGAGAATA68ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
UCRCS06_0003K04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0003K04, mRNA sequence.
CN190541.1:68-91
GCCAATTTTAGAACAAATCATTCGAGAATA68ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
UCRCS06_0004B10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0004B10, mRNA sequence.
CN190820.1:61-84
GCCAATTTTAGAACAAATCATTCGAGAATA61ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
UCRPT02_68E04_g Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-68E04-I7-5.g, mRNA sequence.
CX643436.1:64-87
GCCAATTTTAGAACAAATTATTCGAGAATA64ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
Citrus unshiu mRNA, clone: MWYEK61, 5'-end sequence, expressed in whole fruit.
DC894992.1:66-89
GCCAATTTTAGAACAAATCATTCGAGAATA66ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
UCRCS11_03C15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0003C15, mRNA sequence.
DN618880.1:62-85
GCCAATTTTAGAACAAATCATTCGAGAATA62ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
UCRCS11_04M01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0004M01, mRNA sequence.
DN620037.1:46-69
GCCAATTTTAGAACAAATCATTCGAGAATA46ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
CS00-C3-705-019-G10-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY736720.1:50-73
GCCAATTTTAGAACAAATCATTCGAGAATA50ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
CS00-C3-705-108-E05-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY743827.1:67-90
GCCAATTTTAGAACAAATCATTCGAGAATA67ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
PT11-C1-901-081-H11-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, mRNA sequence.
EY825487.1:85-108
GCCAATTTTAGAACAAATTATTCGAGAATA85ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
Citrus unshiu LGTase mRNA for limonoid UDP-glucosyltransferase, complete cds.
AB033758.1:50-73
GCCAATTTTAGAACAAATCATTCGAGAATA50ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
Citrus maxima cultivar Liangpin You limonoid UDP-glucosyltransferase mRNA, complete cds.
EU304828.1:1-24
1ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
Citrus limettioides limonoid UDP-glucosyltransferase (SLLGT) gene, complete cds.
EU531463.1:1-24
1ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
Citrus x paradisi cultivar Marsh seedless limonoid UDP-glucosyltransferase (SLLGT) gene, complete cds.
EU531464.1:1-24
1ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
Citrus sinensis cultivar Shahsavari limonoid UDP-glucosyltransferase (SLLGT) gene, complete cds.
EU531465.1:1-24
1ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
Citrus aurantium limonoid UDP-glucosyltransferase (SLLGT) gene, complete cds.
EU531466.1:1-24
1ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
Citrus sinensis cultivar Thompson navel limonoid UDP-glucosyltransferase (SLLGT) gene, complete cds.
EU531467.1:1-24
1ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
Citrus x paradisi cultivar Duncan putative limonoid UDP-glucosyltransferase mRNA, complete cds.
KM105844.1:1-24
1ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
Citrus reticulata limonoid glucosyltransferase mRNA, complete cds.
KP306791.1:1-24
1ATGGGAACTGAATCTCTTGTTCATGTCTTACTAGTTTCATTCCCCGGCCATGGC
Citrus aurantium cDNA, clone: 1_2_D08, ovule suppression subtractive hybridization cDNA library.
BB999280.1:593-616
GCCATGGCCGGGGAATGAAACTAGTAAGAC593ATGAACAAGAGATTCAGTTCCCATTATTCTCGAATGATTTGTTCTAAAATCGGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGGGAACTGAATCTCTTGTTCAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGGGAACTGAATCTCTTGTTCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.295 | 1.286 | search_plus_done; http://172.18.8.135:50400/match?q=ATGGGAACTGAATCTCTTGTTCAT&k=0&no_gap=0&offset=0&limit=50
1.416 | 0.122 | search_minus_done; http://172.18.8.135:50400/match?q=ATGAACAAGAGATTCAGTTCCCAT&k=0&no_gap=0&offset=0&limit=20
1.417 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).