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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-11 15:21:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mus musculus genome assembly, chromosome: 9.
OW971604.1:5649816-5649834
TGGAGGTGGCCTGTTTCTACAAAGAAGTAT5649816ATGGGGATGGGTGATGAATTAATGAAGTTGACATGTCAATACAAGATAT
Mus musculus molossinus genome assembly, chromosome: 9.
OW971668.1:5866462-5866480
TGGAGGTGGCCTGTTTCTACAAAGAAGTAT5866462ATGGGGATGGGTGATGAATTAATGAAGTTGACATGTCAATACAAGATAT
Mus spretus genome assembly, chromosome: 9.
OW971688.1:5905901-5905919
TGGAGGTGGCCTGTTTCTACAAAGAAGTAT5905901ATGGGGATGGGTGATGAATTAATGAAGTTGACATGTCAATACAAGATAT
Mus musculus musculus genome assembly, chromosome: 9.
OW971772.1:5847516-5847534
TGGAGGTGGCCTGTTTCTACAAAGAAGTAT5847516ATGGGGATGGGTGATGAATTAATGAAGTTGACATGTCAATACAAGATAT
Mus musculus castaneus genome assembly, chromosome: 9.
OW971843.1:5765105-5765123
TGGAGGTGGCCTGTTTCTACAAAGAAGTAT5765105ATGGGGATGGGTGATGAATTAATGAAGTTGACATGTCAATACAAGATAT
UCRCP01_003_E12_T7 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_003_T7_E12, mRNA sequence.
CX663385.1:735-753
TCGTAGCCGTCGGAGATTGCCTCGAGAGCA735ATGGGGATGGGTGATGAATTTCTATGCAAGGATTTGTTGAAAAAATGAG
UCRCP01_009_A02_T7 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_009_T7_A02, mRNA sequence.
CX664254.1:739-757
TCGTAGCCGTCGGAGATTGCCTCGAGAGCA739ATGGGGATGGGTGATGAATTTCTATGCAAGGATTTGTTGAAAAAATGAG
UCRCP01_015_C11_T7 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_015_T7_C11, mRNA sequence.
CX665262.1:735-753
TCGTAGCCGTCGGAGATTGCCTCGAGAGCA735ATGGGGATGGGTGATGAATTTCTATGCAAGGATTTGTTGAAAAAATGAG
UCRCP01_049_E01_T7 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_049_T7_E01, mRNA sequence.
CX670205.1:738-756
TCGTAGCCGTCGGAGATTGCCTCGAGAGCA738ATGGGGATGGGTGATGAATTTCTATGCAAGGATTTGTTGAAAAAATGAG
Gossypium bickii isolate GPG1lz chromosome 11.
CP106711.1:133255736-133255754
AAAATATAATTATAAGAGAGAGAAAAAAAC133255736ATGGGGATGGGTGATGAATTTAAAAATTAAGGTAAACTTTTGTTTGACT
Yponomeuta sedellus genome assembly, chromosome: 13.
OW203734.1:1149919-1149937
AAGAGAATAGACTTCGCGGCGATGGATGTG1149919ATGGGGATGGGTGATGAATCTCTAGCGCTTGCACATTCAACTCCCCACC
Acrobasis suavella genome assembly, chromosome: Z.
OW971928.1:5453656-5453674
AACAGACTTTGATCTGGTACAGGGCAATGT5453656ATGGGGATGGGTGATGAATGCGGTCGGAACTCTGGCAACAGTTTGTGTG
Euclidia mi genome assembly, chromosome: 3.
OX123183.2:71029450-71029468
TAATGATGAGGAGCCTAATTTAATTGGATT71029450ATGGGGATGGGTGATGAATGGACTGAAAATAAGACTATGGATAATAAAC
Luidia sarsii genome assembly, chromosome: 6.
OX465106.1:22204431-22204449
AAAGGTGTGGGGAAGGAGAAGGGGGTGAGG22204431ATGGGGATGGGTGATGAATGGGGGTAGGGGTGGGGATAGGGGATTGGTG
Peromyscus eremicus genome assembly, chromosome: 4.
OX460397.1:150279602-150279620
CCAGGCATCCATCCATGTATCTATCCCTCC150279602ATTCATCACCCATCCCCATCCATATATCTCTCCACTTAGGCATCCCTCA
Peromyscus eremicus genome assembly, chromosome: 4.
OX460469.1:152447111-152447129
CACAGCATCCATCCATGTATCTATCCCTCC152447111ATTCATCACCCATCCCCATCCATATATCTCTCCACTTAGGCATCCCTCA
UCRCP01_003_E12_T3 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_003_T3_E12, mRNA sequence.
CX663384.1:37-55
ACTCATTTTTTCACAAATCCTTGCATAGAA37ATTCATCACCCATCCCCATTGCTCTCGAGGCAATCTCCGACGGCTACGA
UCRCP01_009_A02_T3 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_009_T3_A02, mRNA sequence.
CX664253.1:38-56
CTCATTTTTTCAACAAATCCTTGCATAGAA38ATTCATCACCCATCCCCATTGCTCTCGAGGCAATCTCCGACGGCTACGA
UCRCP01_015_C11_T3 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_015_T3_C11, mRNA sequence.
CX665261.1:37-55
ACTCATTTTTTCACAAATCCTTGCATAGAA37ATTCATCACCCATCCCCATTGCTCTCGAGGCAATCTCCGACGGCTACGA
UCRCP01_049_E01_T3 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_049_T3_E01, mRNA sequence.
CX670204.1:37-55
ACTCATTTTTTCACAAATCCTTGCATAGAA37ATTCATCACCCATCCCCATTGCTCTCGAGGCAATCTCCGACGGCTACGA
Citrus reticulata microsatellite DNA, clone CiO1D1O.
AJ567396.1:381-399
CTCATTTCCTCTACAAATCCTTGCATAGAA381ATTCATCACCCATCCCCATTGCTCTCGAGGCAATCTCCGACGGCTACGA
Gossypium rotundifolium isolate GPK201 chromosome 11.
CP106732.1:3726746-3726764
ACTATTTTTATAATTTATCTTAATTTTTAA3726746ATTCATCACCCATCCCCATATTTTTCTCTTATAATTATATTTTTACATT
Warburgia ugandensis isolate CL-2023a chromosome 7.
CP141132.1:43939053-43939071
GTCCATCTCTATTTCTGAAACCCATCTTCC43939053ATTCATCACCCATCCCCATTTGAATTTGATGGTACCCACTACAAAGATC
Citrus reshni microsatellite DNA, locus mCrCIR01D10.
FR692357.1:381-399
CTCATTTCCTCTACAAATCCTTGCATAGAA381ATTCATCACCCATCCCCATTGCTCTCGAGGCAATCTCCGACGGCTACGA
Chionographis japonica genome assembly, chromosome: 9.
OX393557.1:1569268-1569286
TTCCTCCCACCCCCACTGGTGGACAAGAGG1569268ATTCATCACCCATCCCCATCGATGAGGCTAGGGCCCGTCAAATGGAAGC
Clavaria fumosa genome assembly, chromosome: 10.
OX637803.1:1731409-1731427
CAGTCTATCACACCGATTTCTCTCTTGCTC1731409ATTCATCACCCATCCCCATGGCAGCGGCAGCAGCATCCCCACCCTCTTT
Citrus sinensis genome assembly, chromosome: 2.
OY754319.1:11846066-11846084
CTCATTTCCTTTACAAATCCTTGCATAGAA11846066ATTCATCACCCATCCCCATTGCTCTCGAGGCAATCTCCAACGGCTACGA
Verbascum thapsus genome assembly, chromosome: 6.
OY770109.1:13304826-13304844
CTACATAAAGTAAAGCAACTAGTGGTGGAT13304826ATTCATCACCCATCCCCATGTAACCACCCACCCCATAGTGCTTACAACG
Pinctada fucata DNA, chromosome 1, nearly complete sequence, Principal Pseudohaplotype.
AP027102.1:60562308-60562326
GAATAAAGGGAAATATTACGTTCAACATTT60562308ATTCATCACCCATCCCCATCAAGAATATACAGTGTATGAAACCAATAAA
Eupsilia transversa genome assembly, chromosome: 2.
OU611874.1:17229033-17229051
TTAACGTATCAAAATAATCCAACCCATCCC17229033ATTCATCACCCATCCCCATCCACATAATCCAACTAAATTAAAGTATGTT
Stomoxys calcitrans genome assembly, chromosome: 5.
OY720439.1:99745737-99745755
CATTTCGCTGTTCCACAGGTTTGCATGCGA99745737ATTCATCACCCATCCCCATTAACTCGGACTGCGTCGACCCGAACGGTTT
Maratus michaelseni genome assembly, chromosome: 5.
OZ007591.1:1234901-1234919
AAATCAAATCTTGATGATCCCACATGATTT1234901ATTCATCACCCATCCCCATGATTTATTTCCCACATCTTGATGATCTCTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGGGGATGGGTGATGAAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGGGGATGGGTGATGAAT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.492 | 0.483 | search_plus_done; http://172.18.8.135:50400/match?q=ATGGGGATGGGTGATGAAT&k=0&no_gap=0&offset=0&limit=50
0.769 | 0.277 | search_minus_done; http://172.18.8.135:50400/match?q=ATTCATCACCCATCCCCAT&k=0&no_gap=0&offset=0&limit=36
0.780 | 0.012 | cgi_end;

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