GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 15:03:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Erpetoichthys calabaricus genome assembly, chromosome: 14.
LR536445.2:11178389-11178408
GGATCTTCTTGAAGTCCTTACCTCTAGGAT11178389ATGGTTATGGGCGAGTTGACTCATGGGATAAAGGACTGATCCCCTTGGTG
MAG: Thiocapsa sp. isolate M50B4 chromosome, complete genome.
CP073760.1:5440193-5440212
CCACGATATGTCGCGAGAGGATTGCACGGA5440193ATGGTTATGGGCGAGTTGACTTCGGGGCGTCGCGGGACGAGCCGAGCAGG
Trifolium repens mRNA, clone: WCC32k03_045, unspecified EST.
FY465442.1:166-185
TCTAATTTATCTTAATCTATTCTATAATTT166ATGGTTATGGGCGAGTTGACTCAGTCGGAGGTGTACTCGCCGCCGAGAAC
Trifolium repens mRNA, clone: WCC43k06_093, unspecified EST.
FY469404.1:190-209
AAATTTAATCTTAATCTATTCTATAATTTG190ATGGTTATGGGCGAGTTGACTCAGTCGGAGGTGTACTCGCCACCGAGAAC
Trifolium dubium genome assembly, chromosome: 6.
OX638067.1:4549847-4549866
ATTAATCTATAATCTATTATTTATCATCAT4549847ATGGTTATGGGCGAGTTGACTCAGTCGGAGGTGTACTCGCCACCGAGAAC
Trifolium dubium genome assembly, chromosome: 8.
OX638069.1:5458274-5458293
TAATTAATTAATCTATAATCTCTTTATCAT5458274ATGGTTATGGGCGAGTTGACTCAGTCGGAGGTGTACTCGCCACCGCGAAC
Trifolium fragiferum genome assembly, chromosome: 3.
OX940791.1:9541844-9541863
CTAATTTATCTTAATCTATTCTATAATTTT9541844ATGGTTATGGGCGAGTTGACTCAGTCGGAGGTGTACTCGCCACCGAGAAC
Cicer arietinum chromosome Ca2.
CP039332.1:30771869-30771888
GTCCTCGGCGAGTACGCAACCTCCGTCTGA30771869GTCAACTCGCCCATAACCATCAAATTCTTCTATTCTATATGTCGTTTAAT
Cicer arietinum chromosome Ca2.
CP040767.1:30771865-30771884
GTCCTCGGCGAGTACGCAACCTCCGTCTGA30771865GTCAACTCGCCCATAACCATCAAATTCTTCTATTCTATATGTCGTTTAAT
Trifolium repens isolate ACLI19 chromosome 05_0cc.
CP125844.1:51404770-51404789
GTTCTCGGTGGCGAGTACACCTCCGACTGA51404770GTCAACTCGCCCATAACCATCAAATTATAGAATAGATTAAGATTAAATTC
Trifolium repens isolate ACLI19 chromosome 05_Pall.
CP125845.1:51979172-51979191
GTTCTCGGCGGCGAGTACACCTCCGACTGA51979172GTCAACTCGCCCATAACCATAAATTATAGAATAGATTAAGATAAATTAGA
Trifolium subterraneum genome assembly, chromosome: 7.
OX637467.1:47403967-47403986
GTTCTCGGTGGCGAGTACACCTCCGACTGA47403967GTCAACTCGCCCATAACCATAAAATTATAGAATAGATTAAGATAAATTAG
Astragalus glycyphyllos genome assembly, chromosome: 2.
OY754308.1:93009798-93009817
TGAGTTCTCGGCGAGTACACCTCTGTCTGA93009798GTCAACTCGCCCATAACCATGAATTAAAATATATCAGACTGAGTCGACTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGGTTATGGGCGAGTTGAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGGTTATGGGCGAGTTGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.293 | 0.284 | search_plus_done; http://172.18.8.135:50400/match?q=ATGGTTATGGGCGAGTTGAC&k=0&no_gap=0&offset=0&limit=50
0.324 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=GTCAACTCGCCCATAACCAT&k=0&no_gap=0&offset=0&limit=43
0.329 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).