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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 20:17:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

0123302 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV117990.1:505-524
TCTGGAAATGGACACTGAGGAGCTCCTGTT505ATGTACACTTTTCTTCCCCGGTGGCTAAAATTTGAAAGAAACCTAACAAG
lkh06c10.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ074225.1:362-381
TCTGGAAATGGACACTGAGGAGCTCCTGTT362ATGTACACTTTTCTTCCCCGGTGGCTAAAATTTGAAAGAAACCTGTCCAA
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:52416096-52416115
TCTGGAAATGGACACTGAGGAGCTCCTGTT52416096ATGTACACTTTTCTTCCCCGGTAGCTAAAATTTGAAAGAAACCTGTCCAA
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:11355754-11355773
TCTGGAAATGGACACTGAGGAGCTCCTGTT11355754ATGTACACTTTTCTTCCCCGGTGGCTAAAATTTGAAAGAAACCTGTCCAA
Brassica napus genome assembly, chromosome: A06.
HG994360.1:37434175-37434194
TCTGGAAATGGACACTGAGGAGCTCCTGTT37434175ATGTACACTTTTCTTCCCCGGTAGCTAAAATTTGAAAGAAACCTGTCCAA
Brassica rapa genome, scaffold: A06.
LR031569.1:47497386-47497405
TCTGGAAATGGACACTGAGGAGCTCCTGTT47497386ATGTACACTTTTCTTCCCCGGTAGCTAAAATTTGAAAGAAACCTGTCCAA
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:51113442-51113461
TCTGGAAATGGACACTGAGGAGCTCCTGTT51113442ATGTACACTTTTCTTCCCCGGTAGCTAAAATTTGAAAGAAACCTGTCCAA
0123388 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV118076.1:594-613
CTTGTTAGGTTTCTTTCAAATTTTAGCCAC594CGGGGAAGAAAAGTGTACATAACAGGAGCTCCTCAGTGTCCATTTCCAGA
Brassica napus acidic endochitinase (ChiA-1) gene, partial cds.
AF207560.1:756-775
TTGGACAGGTTTCTTTCAAATTTTAGCCAC756CGGGGAAGAAAAGTGTACATAACAGGAGCTCCTCAGTGTCCATTTCCAGA
Brassica napus acidic endochitinase (ChiA-2) gene, partial cds.
AF207561.1:734-753
TTGGACAGGTTTCTTTCAAATTTTAGCTAC734CGGGGAAGAAAAGTGTACATAACAGGAGCTCCTCAGTGTCCATTTCCAGA
Brassica oleracea acidic endochitinase (ChiA) gene, partial cds.
AF207562.1:756-775
TTGGACAGGTTTCTTTCAAATTTTAGCCAC756CGGGGAAGAAAAGTGTACATAACAGGAGCTCCTCAGTGTCCATTTCCAGA
Brassica rapa acidic endochitinase (ChiA) gene, partial cds.
AF207563.1:733-752
TTGGACAGGTTTCTTTCAAATTTTAGCTAC733CGGGGAAGAAAAGTGTACATAACAGGAGCTCCTCAGTGTCCATTTCCAGA
Brassica napus genome assembly, chromosome: C07.
HG994371.1:44433300-44433319
TTGGACAGGTTTCTTTCAAATTTTAGCCAC44433300CGGGGAAGAAAAGTGTACATAACAGGAGCTCCTCAGTGTCCATTTCCAGA
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:47298839-47298858
TTGGACAGGTTTCTTTCAAATTTTAGCCAC47298839CGGGGAAGAAAAGTGTACATAACAGGAGCTCCTCAGTGTCCATTTCCAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGTACACTTTTCTTCCCCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGTACACTTTTCTTCCCCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.406 | 0.397 | search_plus_done; http://172.18.8.135:50400/match?q=ATGTACACTTTTCTTCCCCG&k=0&no_gap=0&offset=0&limit=50
0.610 | 0.204 | search_minus_done; http://172.18.8.135:50400/match?q=CGGGGAAGAAAAGTGTACAT&k=0&no_gap=0&offset=0&limit=43
0.614 | 0.005 | cgi_end;

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