GGGenome | Results

Database:
mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 12:00:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Ctenomys sociabilis 336348.Ctso mRNA sequence.
JU558968.1:347-366

TGCCAGATATTACAGAGTGCCAGGAGAAAG347ATGTCCTCTGTATGTTTGAAGCTGAAATGCAATGGAAAAGAGACTATCTA

Muscardinus avellanarius genome assembly, chromosome: 7.
OY726564.1:41257156-41257175

ACCTTTACCATTTCTGCTCACTAGCTGTGT41257156TTCAAACATACAGAGGACATTTTGCAGGCAATACCATGTTTTGTGTTTGT

Pinus pinaster root EST, clone RS43B11.
BX680414.1:566-585

ATCATGATGTTCGCATCCGTGACCACATTG566TTCAAACATACAGAGGACATAACCAGGGAGGTTTGTGGATTGAAATGGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.112 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=ATGTCCTCTGTATGTTTGAA&k=0&no_gap=0&offset=0&limit=50
0.163 | 0.051 | search_minus_done; http://172.18.8.135:50400/match?q=TTCAAACATACAGAGGACAT&k=0&no_gap=0&offset=0&limit=49
0.164 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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