GGGenome | Results

Database:
mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 14:07:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

EG-A11_006_E06 Oil palm abnormal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN600053.1:221-240

AGGTCTCCCTCAACCATGGCATGAGTCATT221ATGTTCTCGTTGTCTATCGGCATGCCTTTGCGACCCTATCGATCGCCCCG

Elaeis guineensis EST, clone (6lib)_isotig28694.
LM622291.1:1154-1173

CGGGGCGATCGATAGGGTCGCAAAGGCATG1154CCGATAGACAACGAGAACATAATGACTCATGCCATGGTTGAGGGAGACCT

Trididemnum nubilum genome assembly, chromosome: 10.
OZ014478.1:27397149-27397168

ACAATTTAGCTCGTTGCCTGACTCGCTGCT27397149CCGATAGACAACGAGAACATTTAATTGTTTATAATCAACACAGCTATACG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.158 | 0.149 | search_plus_done; http://172.18.8.135:50400/match?q=ATGTTCTCGTTGTCTATCGG&k=0&no_gap=0&offset=0&limit=50
0.315 | 0.157 | search_minus_done; http://172.18.8.135:50400/match?q=CCGATAGACAACGAGAACAT&k=0&no_gap=0&offset=0&limit=49
0.316 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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