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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 08:45:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Barbatula barbatula genome assembly, chromosome: 15.
OX344782.1:9433988-9434006
GTGGAAGATTGAAATCACAGTCAAATTTAA9433988ATGTTGATGCTACTGAGACTTCAGCCTGGATTTCCCAGCCAGGGTCACA
Brassica oleracea var. viridis mRNA, clone: KALE-011A03, 5' end sequence.
DK459760.1:463-481
ACCACGCACAGAGATAAGAACAAGTTGTCG463ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGCATAGTTTACG
BNARO5GH_T3_015_E01_30NOV2006_007 Brassica napus BNARO5GH Brassica napus cDNA 5', mRNA sequence.
ES906593.1:208-226
AAGGACATGCACGGAGAAAAAAGCTTTTCG208ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGGATAGTTTATG
BNAPO1GH_T3_018_F03_15JUN2007_021 BNAPO1GH Brassica napus cDNA 5', mRNA sequence.
GR451772.1:384-402
AATTTGCGTTTTTTTTAGAACAAGTTGTCG384ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGCATAGTTTACG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_485.
FX659053.1:386-404
AAGAACATGTACAGAGAAAAGGGCCTGTCG386ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGCATAGTTTACG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7942.
FX700962.1:423-441
AAGAACATGTACAGAGAAAAGGGTTTGTCG423ATGTTGATGCTACTGAGACTATCATTCCAAAGCTTAGGCATAGTGTACG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_18282.
FX755040.1:371-389
AAGAACATGTACAGAGAAAAGGGTTTGTCG371ATGTTGATGCTACTGAGACTATCATTCCAAAGCTTAGGCATAGTGTACG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_11644.
FX758564.1:377-395
AAGAACATGTACAGAGAAAAGGGCCTGTCG377ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGCATAGTTTACG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_43718.
FX791446.1:352-370
AAGAATATGTACAGAGAAAAGGGCTTGTCG352ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGGATAGTTTATG
TSA: Raphanus sativus RS04642 mRNA sequence.
JT789189.1:212-230
AAGAATATGTACAGAGAAAAGGGCTTGTCG212ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGGATAGTTTATG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB067M19, complete sequence.
AC232515.1:25100-25118
AGTTTAAATGTTTTTGATCAGGGTTTGTCG25100ATGTTGATGCTACTGAGACTATCATTCCAAAGCTTAGGCATAGTGTACG
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:5730023-5730041
CAATTTTGCGTTTTCTTTAACCAGTTGTCG5730023ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGCATAGTGTACG
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24746622-24746640
TTAATTTTGCGTTTTCATCAGGGCTTGTCG24746622ATGTTGATGCTACTGAGACTATCATTCCAAAGTTTAGGGATAGTTTATG
Brassica napus genome assembly, chromosome: A01.
HG994355.1:5964519-5964537
CAATTTTGCGTTTTCTTTAACCAGTTGTCG5964519ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGCATAGTTTACG
Brassica napus genome assembly, chromosome: A03.
HG994357.1:24878837-24878855
TTTTAATTGTGTTTTCATCAGGGCCTATCG24878837ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGGATAGTTTACG
Brassica napus genome assembly, chromosome: A03.
HG994357.1:24890540-24890558
TTAATTTTGCGTTTTCATCAGGGCTTGTCG24890540ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGGATAGTTTATG
Brassica napus genome assembly, chromosome: A08.
HG994362.1:15114145-15114163
AGTTTAAATGTTTTTGATCAGGGCTTGTCG15114145ATGTTGATGCTACTGAGACTATCATTCCAAAGCTTAGGGATAGTGTACG
Brassica napus genome assembly, chromosome: C01.
HG994365.1:8540115-8540133
ATTTGCGTTTTTTTATAGAACAAGTTGTCG8540115ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGCATAGTTTACG
Brassica napus genome assembly, chromosome: C07.
HG994371.1:48580462-48580480
AATTTTTGCTTTTTTCATCAGAGCTTTTCG48580462ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGGATAGTTTATG
Brassica rapa genome, scaffold: A03.
LR031572.1:24370611-24370629
TTAATTTTGCGTTTTCATCAGGGCTTGTCG24370611ATGTTGATGCTACTGAGACTATCATTCCAAAGTTTAGGGATAGTTTATG
Brassica rapa genome, scaffold: A08.
LR031575.1:14043843-14043861
AGTTTAAATGTTTTTGATCAGGGCTTGTCG14043843ATGTTGATGCTACTGAGACTATCATTCCAAAGCTTAGGGATAGTGTACG
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:51349051-51349069
AATTTTTGCTTTTTTCATCAGAGCTTTTCG51349051ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGGATAGTTTATG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:8467174-8467192
ATTTGCGTTTTTTTATAGAACAAGTTGTCG8467174ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGCATAGTTTACG
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:47952898-47952916
TGCGCTTATTTTTTTCACCAGGGCTTGTCG47952898ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGGATAGTTTATG
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:16752049-16752067
AGTTTAAATTTTTTTGATCAGGGCCTGTCG16752049ATGTTGATGCTACTGAGACTATCATTCCAAAGTCTAGGCATAGTTTACG
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24498487-24498505
TTAATTTTGCGTTTTCATCAGGGCTTGTCG24498487ATGTTGATGCTACTGAGACTATCATTCCAAAGTTTAGGGATAGTTTATG
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:19861875-19861893
AGTTTAAATGTTTTTGATCAGGGCTTGTCG19861875ATGTTGATGCTACTGAGACTATCATTCCAAAGCTTAGGGATAGTGTACG
Avena sativa genome assembly, chromosome: 4A.
OU342381.1:41131918-41131936
CTAAGCTAGATGTGCGCTCTCAAGTAGGTG41131918ATGTTGATGCTACTGAGACGAACGGGAATTGAACAAGAGAGGGGTTTGG
Avena sativa genome assembly, chromosome: 4.
OV702282.1:29722158-29722176
CTAAGCTAGATGTGCGCTCTCAAGTAGGTG29722158ATGTTGATGCTACTGAGACGAACGGGAATTGAACAAGAGAGGGGTTTGG
Cordylochernes scorpioides isolate IN4F17 chromosome 18.
CP092880.1:33161822-33161840
AAAATAAAAATATTCACAAGGGTGCTCTGA33161822ATGTTGATGCTACTGAGACATGCTAATGTATCCTGGGTAGATCTTCTTT
Cordylochernes scorpioides isolate IN4F17 chromosome 18.
CP092880.1:33174759-33174777
AAAATAAAAATATTCACAAGGGTGCTCTGA33174759ATGTTGATGCTACTGAGACATGCTAATGTATCCTGGGTAGATCTTTTTT
Mythimna pallens genome assembly, chromosome: 12.
OY540836.1:24280265-24280283
GAGCACTGAACTATACAACGGTAACGTAGT24280265ATGTTGATGCTACTGAGACTACACAATACTAAAAAGTCGATACAAGTCT
TSA: Raphanus sativus RS01739 mRNA sequence.
JT786286.1:2399-2417
CGTACACTATGCCTAGACTTTGGAATGATA2399GTCTCAGTAGCATCAACATCGACAGGCCCTTTTCTCTGTACATGTTCTT
TSA: Raphanus sativus RS01741 mRNA sequence.
JT786288.1:711-729
CGTACACTATGCCTAGACTTTGGAATGATA711GTCTCAGTAGCATCAACATCGACAGGCCCTTTTCTCTGTACATGTTCTT
BOIEE91TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIEE91, genomic survey sequence.
CC941715.1:570-588
CGTAAACTATGCCTAGACTTTGGAATGATA570GTCTCAGTAGCATCAACATCGACAACTTGGTCTATAAAAAAACGCAAAT
KBrH005F06F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH005F06, genomic survey sequence.
CW980916.1:201-219
CATAAACTATCCCTAGACTTTGGAATGATA201GTCTCAGTAGCATCAACATAGAAAAGCTCTGATGAAAAAAGCAAAAATT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH039L17, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC241126.1:22812-22830
CATAAACTATCCCTAAACTTTGGAATGATA22812GTCTCAGTAGCATCAACATCGACAAGCCCTGATGAAAACGCAAAATTAA
Brassica rapa subsp. pekinensis clone KBrH113K07, complete sequence.
CU914557.1:87098-87116
CGTAAACTATGCCTAGACTTTGGAATGATA87098GTCTCAGTAGCATCAACATCGACAACTGGTTAAAGAAAACGCAAAATTG
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:11338282-11338300
CGTACACTATCCCTAAGCTTTGGAATGATA11338282GTCTCAGTAGCATCAACATCGACAAGCCCTGATCAAAAACATTTAAACT
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:47908506-47908524
CGTAAACTATGCCTAGACTTTGGAATGATA47908506GTCTCAGTAGCATCAACATCGACAACTTGTTCTAAAAAAAACGCAAATT
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:7204899-7204917
CATAAACTATCCCTAGACTTTGGAATGATA7204899GTCTCAGTAGCATCAACATCGAAAAGCTCTGATGAAAAAAGCAAAAATT
Thlaspi arvense genome assembly, chromosome: 7.
OU466863.1:8963401-8963419
CGTAAACTATCCCTAGACTTTGGAATGATA8963401GTCTCAGTAGCATCAACATCGATAATCCCTGATAACAAACACCAGATTT
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:12142234-12142252
CGTAAACTATGCCTAGACTTTGGAATGATA12142234GTCTCAGTAGCATCAACATCGACAGGCCCTGATCAAAAAAATTTAAACT
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:5697604-5697622
CATAAACTATCCCTAGACTTTGGAATGATA5697604GTCTCAGTAGCATCAACATCGACAAGCCCTGGTGAAAAAAATAAGCGCA
Potentilla sterilis genome assembly, chromosome: 9.
OY821762.1:31684929-31684947
TTATCATCAAATTTATTCACATAACTATCT31684929GTCTCAGTAGCATCAACATCATTTGCAAAAAGTGGAAATATTTCAGGAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGTTGATGCTACTGAGAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGTTGATGCTACTGAGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.600 | 0.591 | search_plus_done; http://172.18.8.135:50400/match?q=ATGTTGATGCTACTGAGAC&k=0&no_gap=0&offset=0&limit=50
0.781 | 0.181 | search_minus_done; http://172.18.8.135:50400/match?q=GTCTCAGTAGCATCAACAT&k=0&no_gap=0&offset=0&limit=18
0.790 | 0.009 | cgi_end;

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