GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:38:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Phragmites australis genome assembly, chromosome: 1.
OY282612.1:27748528-27748546
CAGTTCATGTGCAAGACTTGAGCCAAAGGC27748528ATGTTGATTACGAGACCTTTGTATCAAGTCAACAATGAGATGCATGATT
Citrus sinensis genome assembly, chromosome: 7.
OY754324.1:24255281-24255299
GTTAGCAGGCTAAGAATTGGTACCATGCAG24255281ATGTTGATTACGAGACCTTCAAGTTGCTTCAGGTTGCTCGTCTTTTTTG
Apotomis turbidana genome assembly, chromosome: 14.
LR990294.1:16359233-16359251
GGTTTAACTAGCTGAATACTGTTCAATTAG16359233ATGTTGATTACGAGACCTTAGAGGCTTAAATACCACTGAGAGTATTTTC
Citrus reticulata microsatellite DNA, locus mCrCIR06B05, allele 06B05-ga(26).
AM489744.1:421-439
CAAAAAAGACGAGCAACCTGAAGCAACTTG421AAGGTCTCGTAATCAACATCTGCATGGT
Avena sativa genome assembly, chromosome: 2.
OV702280.1:109145992-109146010
TCTCTACTAGAAACTATCCTATTATATCAG109145992AAGGTCTCGTAATCAACATGATTATTTTGTACTTTTTCAATCGGAAGGC
Stratiomys singularior genome assembly, chromosome: 1.
OX940877.1:163441375-163441393
GCGTAGCAATGTATCTATTTTGAGGGTGTG163441375AAGGTCTCGTAATCAACATTTCTTATTCCCAAGGTTTTCTCAGGATAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGTTGATTACGAGACCTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGTTGATTACGAGACCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.119 | 0.110 | search_plus_done; http://172.18.8.135:50400/match?q=ATGTTGATTACGAGACCTT&k=0&no_gap=0&offset=0&limit=50
0.146 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=AAGGTCTCGTAATCAACAT&k=0&no_gap=0&offset=0&limit=47
0.148 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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