GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-18 19:07:11, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CsB10STC_Bam_27I18R_739 ends of BAC library of B10 line of Cucumis sativus L. (BamHI) Cucumis sativus genomic, genomic survey sequence.
GS835677.1:516-535
TTGTTGCTGATATTACCTCCTTTGTTAGTG516ATGTTGTTGGACCCCTTCAATTGTTGTTGTTGTTGTTGTTGTTGTTGGTG
Cucumis melo isolate PI 511890 chromosome 2.
CP136103.1:830256-830275
TTGTTGGTGATATTACCTCCTTTGTTAGTG830256ATGTTGTTGGACCCCTTCAATTGTTGTTGTTGTTGTTGTTGGTGTTGAAG
Cucumis melo genomic scaffold, anchoredscaffold00025.
LN681806.1:826720-826739
TTGTTGGTGATATTACCTCCTTTGTTAGTG826720ATGTTGTTGGACCCCTTCAATTGTTGTTGTTGTTGTTGTTGGTGTTGAAG
Cucumis melo genomic chromosome, chr_2.
LN713256.1:826720-826739
TTGTTGGTGATATTACCTCCTTTGTTAGTG826720ATGTTGTTGGACCCCTTCAATTGTTGTTGTTGTTGTTGTTGGTGTTGAAG
Nephrotoma guestfalica genome assembly, chromosome: 2.
OY829914.1:44544120-44544139
CTGAAGATCCCCGAACATACGTTTCCTCGA44544120ATGTTGTTGGACCCCTTCAATTTCTTAAGTTATTTTTCACCAACCAACTA
Podarcis siculus genome assembly, chromosome: 14.
OZ076851.1:35656733-35656752
TCTGGGAATGATAAGCCTGAGCCCCTTCAG35656733ATGTTGTTGGACCCCTTCAACTGCAGCCAGTGGGGCCAAGGATTATGAGA
Cuc6_3_F04 Cucumber fruit development cDNA library Cucumis sativus cDNA, mRNA sequence.
DN910959.1:582-601
CACCAACAACAACAACAACAACAACAACAA582TTGAAGGGGTCCAACAACATCACTAACAAAGGAGGTAATATCAGCAACAA
EST11006450 CM-PEa library Cucumis melo cDNA clone PEa0002O20, mRNA sequence.
JG464737.1:708-727
CTTCAACACCAACAACAACAACAACAACAA708TTGAAGGGGTCCAACAACATCAC
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_2259, mRNA sequence.
JW920428.1:677-696
CACCAACAACAACAACAACAACAACAACAA677TTGAAGGGGTCCAACAACATCACTAACAAAGGAGGTAATATCAGCAACAA
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 11.
CP124709.1:66740069-66740088
CAAGATGTACATTTGCCCTTTTGATGACTT66740069TTGAAGGGGTCCAACAACATCAAGTCCCCACACATCGAAAGGCCATGAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATGTTGTTGGACCCCTTCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGTTGTTGGACCCCTTCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.202 | 0.193 | search_plus_done; http://172.18.8.135:50800/match?q=ATGTTGTTGGACCCCTTCAA&k=0&no_gap=0&offset=0&limit=50
0.428 | 0.226 | search_minus_done; http://172.18.8.135:50800/match?q=TTGAAGGGGTCCAACAACAT&k=0&no_gap=0&offset=0&limit=44
0.431 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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